genome.fa.s3407.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003407.1 Hibiscus syriacus cultivar Beakdansim tig00007179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  758105

Tables:   1   2   3   4   

This is table  4  of  4  ( 393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668483--668548	19	3.7	19	67	19	61	10	24	19	45	1.82
668487--668578	33	2.8	33	89	1	130	11	27	18	42	1.85
668555--668593	20	2.0	20	100	0	78	17	30	15	35	1.91
668553--668647	20	4.7	20	72	12	68	22	22	22	33	1.97
671118--671171	24	2.2	24	86	0	72	40	16	18	24	1.90
671130--671176	24	2.0	24	91	0	76	34	14	21	29	1.93
671138--671185	24	2.0	24	83	0	60	37	18	18	25	1.94
672033--672178	20	7.3	20	88	4	215	23	20	19	36	1.95
672033--672178	61	2.5	60	89	3	215	23	20	19	36	1.95
672175--672220	21	2.2	21	88	0	65	36	17	28	17	1.92
677404--677434	6	5.2	6	100	0	62	16	35	16	32	1.91
682478--682706	57	4.0	56	90	3	350	14	20	29	35	1.92
687829--687886	25	2.1	28	78	21	86	29	18	6	44	1.76
687835--687886	25	2.1	25	100	0	104	26	17	7	48	1.74
692364--692414	25	2.0	25	96	0	93	41	19	7	31	1.80
696624--696684	23	2.7	23	92	0	104	27	27	26	18	1.98
698026--698175	63	2.4	63	82	7	164	26	21	20	32	1.98
700464--700492	9	3.2	9	100	0	58	20	10	20	48	1.79
708025--708084	13	4.8	13	76	15	72	26	0	1	71	0.95
708025--708089	21	3.3	20	73	20	66	26	0	1	72	0.94
708027--708089	29	2.2	29	83	11	76	25	0	1	73	0.93
708029--708071	16	2.7	16	88	0	59	25	0	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708342--708379	20	1.9	20	94	0	67	73	0	0	26	0.83
708336--708397	28	2.2	29	85	8	83	72	1	0	25	0.94
708357--708395	16	2.4	16	91	0	60	69	2	0	28	1.02
708398--708749	175	2.0	175	100	0	704	40	10	15	34	1.81
711143--711180	20	1.9	20	88	0	58	71	0	2	26	1.00
712481--712542	3	21.3	3	81	6	65	61	1	1	35	1.16
727075--727150	37	2.1	37	89	0	116	53	7	3	34	1.48
730693--730736	22	2.0	22	82	8	54	34	0	27	38	1.57
746517--746543	2	13.5	2	100	0	54	51	0	0	48	1.00
750924--750971	18	2.8	17	78	9	62	29	29	8	33	1.86
755965--755995	14	2.2	14	100	0	62	12	48	25	12	1.77

Tables:   1   2   3   4

The End!