genome.fa.s3407.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003407.1 Hibiscus syriacus cultivar Beakdansim tig00007179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  758105

Tables:   1   2   3   4   

This is table  3  of  4  ( 393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427858--428004	27	5.9	27	67	20	122	17	26	26	29	1.97
427844--428035	48	4.0	48	87	4	280	17	26	26	29	1.98
429666--429712	2	23.5	2	100	0	94	48	0	51	0	1.00
431669--431707	20	2.0	20	89	0	60	51	0	7	41	1.31
442010--442069	5	12.4	5	74	13	54	76	5	1	16	1.04
442069--442221	73	2.1	73	80	11	163	62	3	8	26	1.40
442617--442646	12	2.5	12	100	0	60	86	0	6	6	0.70
442793--442891	35	2.8	36	84	7	121	32	15	15	37	1.88
443352--444216	106	8.3	104	82	7	870	21	20	25	32	1.98
443824--444213	98	3.9	98	83	5	512	19	22	25	32	1.97
443352--444216	204	4.2	204	83	6	1002	21	20	25	32	1.98
444624--444697	37	2.0	37	83	0	94	39	12	21	27	1.89
444770--444974	36	5.8	37	72	15	173	39	13	21	25	1.90
446471--446543	10	6.9	10	75	14	58	2	9	4	83	0.87
446471--446549	23	3.3	23	77	8	79	2	8	5	83	0.88
446471--446546	34	2.3	33	80	13	93	2	9	3	84	0.85
446472--446546	14	5.3	14	76	6	53	2	9	4	84	0.86
449550--449619	5	14.4	5	76	11	65	78	4	1	15	0.98
449550--449635	15	5.2	15	71	22	57	77	3	1	17	0.96
450169--450196	11	2.5	11	100	0	56	85	0	7	7	0.73
450343--450442	35	2.8	36	84	6	121	32	15	15	38	1.88
455645--455697	24	2.2	24	86	0	70	26	9	9	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456578--456630	10	5.7	10	82	17	78	58	20	11	9	1.60
456582--456614	16	2.1	16	100	0	66	57	24	12	6	1.57
457704--457746	14	3.1	14	89	0	68	55	20	13	9	1.66
463438--463464	4	6.8	4	100	0	54	22	0	0	77	0.76
464330--464355	2	13.0	2	100	0	52	50	0	0	50	1.00
469004--469172	60	2.8	60	87	0	178	32	17	14	35	1.90
469022--469172	60	2.5	60	92	0	248	32	15	15	36	1.89
471402--471479	32	2.4	32	84	0	102	39	15	15	29	1.88
471820--472074	20	12.6	20	75	11	207	38	23	18	19	1.93
471820--472074	40	6.3	40	82	7	275	38	23	18	19	1.93
471858--472071	81	2.6	79	84	5	268	36	23	18	20	1.95
471820--472071	121	2.1	121	85	4	339	38	23	18	19	1.93
472631--472681	20	2.5	20	90	0	75	50	21	13	13	1.76
472708--472791	19	4.7	19	80	14	106	13	19	21	46	1.83
472708--472845	52	2.6	52	86	2	168	13	21	21	44	1.86
472789--472844	20	2.8	20	86	10	87	16	23	19	41	1.90
472713--472853	19	7.8	19	73	17	104	13	20	19	46	1.84
472920--472974	25	2.2	24	78	15	58	20	9	18	52	1.71
476160--476195	14	2.6	14	95	0	63	33	0	22	44	1.53
476302--476381	33	2.4	33	91	0	124	46	20	21	12	1.83
476302--476360	19	3.4	19	73	22	74	45	16	22	15	1.84
476391--476590	33	5.8	33	81	9	240	11	22	21	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476389--476597	105	2.0	106	89	2	323	12	22	21	44	1.85
476563--476636	20	3.7	20	67	16	53	21	18	24	35	1.96
478909--478942	12	2.8	12	100	0	68	0	26	0	73	0.83
479117--479170	24	2.2	24	93	0	90	40	20	18	20	1.91
480016--480286	20	13.4	20	82	2	317	19	21	21	38	1.94
480016--480286	41	6.7	41	93	1	395	19	21	21	38	1.94
480016--480286	122	2.2	121	91	0	434	19	21	21	38	1.94
480283--480328	21	2.2	21	84	7	58	36	17	26	19	1.94
484189--484224	18	2.0	18	100	0	72	27	16	11	44	1.82
486584--486633	21	2.4	22	83	10	68	70	6	2	22	1.20
488106--488130	6	4.2	6	100	0	50	32	0	32	36	1.58
488193--488285	21	4.6	21	74	8	102	34	25	17	22	1.96
488170--488285	60	1.9	61	91	3	189	37	25	17	20	1.94
488233--488306	20	3.7	20	74	3	76	39	25	20	14	1.91
488216--488305	41	2.2	41	95	0	162	36	26	18	17	1.94
494741--494792	25	2.1	25	100	0	104	26	0	23	50	1.50
498031--498069	3	12.7	3	84	15	53	66	2	0	30	1.05
514099--514167	23	3.0	23	91	0	102	27	26	26	20	1.99
514272--514307	18	2.0	18	100	0	72	33	33	22	11	1.89
514168--514652	121	4.0	121	94	0	828	36	24	14	24	1.93
514393--514428	18	2.0	18	88	0	54	38	33	16	11	1.84
514514--514549	18	2.0	18	100	0	72	33	33	22	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515929--515972	21	2.1	21	86	0	61	15	27	27	29	1.96
519796--519931	60	2.3	60	80	5	166	32	25	4	38	1.76
521173--521220	17	2.7	18	74	9	53	41	2	4	52	1.32
535697--535776	38	2.1	38	100	0	160	10	15	27	47	1.77
536492--537060	105	5.4	105	91	0	870	23	18	26	31	1.97
547292--547335	20	2.2	20	88	8	63	72	2	6	18	1.17
549750--549829	38	2.1	38	100	0	160	10	15	27	47	1.77
552180--552282	35	2.9	35	83	0	116	42	19	0	36	1.58
554311--554361	23	2.3	23	83	12	63	52	0	5	41	1.25
555651--555683	7	4.7	7	92	0	57	42	0	57	0	0.98
555723--555763	20	2.0	21	85	4	57	39	0	0	60	0.96
572429--572460	2	16.0	2	100	0	64	50	0	0	50	1.00
576945--577015	31	2.3	31	92	4	117	35	16	25	22	1.95
588709--588784	29	2.6	29	85	0	89	25	25	32	17	1.96
600212--600237	2	13.0	2	100	0	52	50	0	0	50	1.00
608310--608334	12	2.1	12	100	0	50	32	32	12	24	1.91
608965--609070	3	35.7	3	89	1	160	33	0	0	65	1.06
621838--621896	24	2.5	24	82	0	73	89	5	1	3	0.62
621837--621896	1	60.0	1	84	0	66	90	5	1	3	0.61
621837--621881	15	3.2	14	90	9	74	93	6	0	0	0.35
622238--622279	19	2.2	20	86	4	59	30	2	11	54	1.49
623060--623576	52	9.9	52	96	2	916	23	15	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624219--624970	119	6.4	119	93	2	1215	36	14	20	29	1.92
624216--624970	235	3.2	234	91	3	1191	36	14	20	29	1.92
625126--625225	3	33.7	3	89	2	157	34	1	1	64	1.07
625716--625745	15	1.9	16	93	6	53	80	3	16	0	0.85
630252--630295	2	22.0	2	100	0	88	50	0	0	50	1.00
643637--643732	19	4.7	19	74	15	75	35	6	28	30	1.82
644139--644276	61	2.2	63	92	3	226	33	25	21	20	1.97
644207--644354	40	3.7	40	96	0	269	35	22	20	20	1.96
644139--644295	61	2.5	60	88	5	199	34	24	21	20	1.97
644396--644468	20	3.6	20	72	17	78	21	20	27	30	1.98
644422--644490	21	3.3	21	73	18	72	18	15	26	39	1.91
644396--644485	41	2.2	41	93	0	153	20	18	26	34	1.96
644554--644590	19	1.9	19	94	0	65	21	16	29	32	1.95
645491--645536	21	2.3	21	85	14	62	34	0	6	58	1.24
647458--647517	29	2.0	30	83	3	77	43	35	3	18	1.67
650404--650459	29	1.9	29	86	13	80	41	3	26	28	1.72
651749--651802	28	1.9	28	96	0	99	29	25	24	20	1.99
659483--659509	11	2.5	11	100	0	54	48	14	0	37	1.45
660245--660285	21	1.9	22	85	5	57	63	4	2	29	1.28
663423--663475	21	2.5	21	84	0	70	20	26	18	33	1.96
663465--663537	20	3.7	20	84	0	110	38	20	19	21	1.94
664078--664149	20	3.5	20	92	5	110	54	18	16	11	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664155--664195	19	2.2	19	90	0	64	48	24	14	12	1.78
664200--664292	19	4.8	19	90	2	150	11	19	18	50	1.77
665979--666354	94	4.1	93	93	2	598	21	11	18	47	1.80
666471--666508	20	1.9	20	94	0	67	52	28	13	5	1.61
666514--666640	19	6.8	19	76	12	129	11	21	20	46	1.82
666517--666640	39	3.3	37	83	11	139	12	20	20	46	1.82
667093--667159	21	3.2	21	66	6	55	23	35	20	19	1.95
667041--667159	42	2.8	42	79	5	98	23	36	17	22	1.95
668270--668305	14	2.6	14	95	0	63	33	0	22	44	1.53
668421--668457	19	1.9	19	100	0	74	51	21	16	10	1.74

Tables:   1   2   3   4