genome.fa.s3421.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003421.1 Hibiscus syriacus cultivar Beakdansim tig00007204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  882701

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 526 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268231--268322	19	5.4	18	72	24	83	7	17	28	46	1.75
268280--268336	14	3.7	14	72	20	51	8	22	24	43	1.81
268452--268767	93	3.4	93	98	0	605	45	18	13	22	1.84
270453--270549	20	5.2	20	70	22	93	47	17	23	11	1.80
270451--270515	21	3.1	21	82	4	96	47	15	26	10	1.78
270500--270556	14	3.7	14	75	20	60	45	22	22	8	1.80
270452--270573	33	3.5	33	88	8	154	47	18	22	10	1.80
270451--270578	19	7.1	19	67	21	78	46	18	24	10	1.81
270590--270646	14	3.7	14	75	20	60	8	24	22	43	1.81
270574--270653	33	2.4	33	95	0	142	8	21	22	47	1.78
270634--270707	21	3.5	21	80	7	96	14	20	17	47	1.83
270786--270858	33	2.2	33	90	2	112	49	17	20	12	1.79
271236--271428	20	9.6	20	84	5	237	18	18	27	35	1.95
276696--276764	34	2.0	34	97	0	129	30	17	18	33	1.94
277366--277642	134	2.1	134	97	0	527	29	15	22	32	1.95
277669--277729	29	2.1	29	93	0	104	27	34	4	32	1.78
278138--278188	3	17.0	3	95	0	66	7	0	25	66	1.18
279137--279187	18	2.8	17	85	11	66	31	33	15	19	1.93
279437--279478	2	21.0	2	100	0	84	50	0	0	50	1.00
291834--291874	17	2.4	17	100	0	82	36	0	12	51	1.40
295511--295545	18	1.9	18	94	0	61	25	34	20	20	1.96
296119--296281	64	2.5	64	82	5	170	26	17	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298816--299147	130	2.5	131	86	1	452	33	11	15	39	1.83
308004--308114	57	1.9	58	87	5	163	47	15	20	16	1.82
313071--313138	21	3.3	21	71	8	68	19	20	26	33	1.96
313069--313163	40	2.3	42	87	3	149	22	21	22	34	1.97
314041--314213	21	8.3	21	78	13	114	37	23	19	19	1.94
314054--314213	19	7.6	21	80	10	134	36	23	20	20	1.95
314054--314186	65	2.1	63	92	2	221	36	24	20	19	1.95
314105--314213	40	2.6	40	84	5	137	34	25	20	19	1.96
314209--314261	21	2.5	21	93	0	88	16	20	32	30	1.95
324063--324140	12	6.8	11	77	8	75	34	20	20	24	1.96
324063--324118	23	2.4	23	100	0	112	33	21	21	23	1.97
324063--324129	35	1.9	35	82	8	57	35	19	20	23	1.95
324382--324450	16	4.4	16	90	3	97	13	11	17	57	1.64
343765--343809	20	2.2	20	92	0	72	37	11	24	26	1.89
348346--348399	24	2.2	24	96	0	99	27	20	27	24	1.99
350100--350185	42	2.0	42	97	0	163	11	13	47	26	1.78
351061--351088	14	2.0	14	100	0	56	50	7	21	21	1.72
353309--353410	51	2.0	51	96	0	186	36	12	20	30	1.90
355153--355193	16	2.7	15	92	7	66	48	12	21	17	1.79
356656--356697	18	2.3	18	100	0	84	69	11	4	14	1.34
366563--366596	17	2.0	17	94	0	59	23	0	20	55	1.43
375387--375469	42	2.0	42	90	0	130	25	18	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375400--375482	42	2.0	42	90	0	130	26	18	24	31	1.97
375729--375933	42	4.7	42	70	16	164	30	18	21	29	1.97
375716--375792	20	3.8	19	73	17	66	27	20	20	31	1.98
375850--375874	13	1.9	13	100	0	50	32	24	20	24	1.98
376328--376534	53	3.9	53	87	7	287	31	19	27	22	1.98
377661--377695	17	2.1	17	94	0	61	28	0	14	57	1.38
380947--380991	23	2.0	23	90	0	72	26	20	44	8	1.80
383077--383221	60	2.5	58	75	15	145	43	4	18	33	1.69
386064--386133	37	2.0	34	86	8	95	47	4	8	40	1.54
388054--388204	76	2.0	76	90	0	239	44	5	23	27	1.74
390419--391020	199	3.0	198	94	0	1051	22	16	13	47	1.82
394903--394973	36	2.0	36	97	0	133	26	19	8	45	1.79
405810--405862	24	2.2	24	96	0	97	39	16	13	30	1.87
409463--409507	22	2.0	22	95	0	81	55	4	6	33	1.46
410706--410750	3	15.3	3	95	4	83	66	0	0	33	0.92
418480--418522	22	2.0	22	90	0	68	13	23	39	23	1.90
426243--426336	39	2.4	39	85	3	118	28	22	28	20	1.98
428228--428320	47	2.0	46	91	2	150	35	10	16	37	1.83
429435--429551	46	2.6	45	79	2	119	35	21	11	31	1.90
429696--429737	20	2.1	20	86	8	59	16	16	0	66	1.25
433219--433249	2	15.5	2	100	0	62	51	0	0	48	1.00
434347--434435	7	12.7	7	80	0	97	39	37	4	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434347--434435	28	3.2	28	85	0	115	39	37	4	19	1.72
434506--434601	7	13.7	7	80	4	104	40	37	2	19	1.64
434508--434598	35	2.6	35	86	6	130	41	36	2	19	1.64
434298--434590	159	1.8	159	86	2	419	42	26	7	23	1.80
436095--436739	323	2.0	319	87	5	915	40	13	15	30	1.86
439085--439146	24	2.6	24	84	0	88	32	6	9	51	1.60
439089--439138	18	2.8	18	87	0	64	36	4	12	48	1.59
441372--441411	19	2.0	20	90	4	64	60	7	5	27	1.45
441413--442124	246	2.9	246	86	3	1013	44	14	14	26	1.84
444083--444148	22	3.0	22	79	2	87	22	25	22	28	1.99
447154--447376	2	111.5	2	100	0	446	50	49	0	0	1.00
447354--447852	272	1.8	269	89	2	775	38	16	13	32	1.87
448811--448917	45	2.3	45	82	6	117	31	15	19	32	1.94
455567--455606	21	1.9	21	85	10	55	35	10	2	52	1.48
457520--457644	47	2.7	47	88	4	175	31	17	20	30	1.96
457903--458310	226	1.8	226	86	3	597	31	15	13	39	1.86
459386--459714	55	5.9	55	84	5	383	30	18	19	30	1.96
459386--459708	165	1.9	166	84	3	425	30	18	19	30	1.96
461717--461757	16	2.6	16	100	0	82	19	4	43	31	1.72
472308--472407	41	2.4	41	83	8	141	22	25	34	19	1.96
472659--472706	16	3.1	14	78	18	51	29	4	2	64	1.23
475892--475978	35	2.5	34	80	12	97	55	9	8	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478250--478290	18	2.3	18	91	4	66	63	2	4	29	1.28
478326--478366	10	4.1	10	96	0	73	36	0	31	31	1.58
484303--484704	81	5.0	81	83	3	490	28	23	12	36	1.91
484303--484702	161	2.5	162	86	5	551	28	23	12	36	1.91
484654--485030	68	5.6	68	89	4	575	30	25	14	29	1.95
484654--485030	134	2.8	134	90	4	587	30	25	14	29	1.95
484654--485037	202	1.9	204	91	3	632	30	25	14	29	1.94
495275--495331	18	3.2	18	87	2	80	14	17	49	19	1.80
497004--497074	16	4.6	16	70	20	53	67	2	0	29	1.05
499598--499646	19	2.7	17	84	9	53	26	18	30	24	1.98
499616--499721	45	2.4	45	85	7	144	30	16	23	29	1.97
502382--502462	24	3.6	23	75	14	87	28	22	25	23	1.99
502360--502482	44	2.8	42	77	8	120	24	20	27	27	1.99
508262--508310	19	2.7	17	84	9	53	26	18	30	24	1.98
508279--508470	64	3.0	61	80	10	215	28	16	26	29	1.97
509017--509092	26	2.8	26	80	9	82	34	19	21	25	1.96
509064--509131	22	3.1	22	84	0	91	33	16	23	26	1.95
509803--509843	21	2.0	21	95	0	73	26	21	26	24	2.00
517990--518039	2	25.0	2	100	0	100	50	0	0	50	1.00
519743--519802	22	2.7	22	94	0	102	30	23	23	23	1.99
521863--521926	32	2.0	32	96	0	119	29	12	25	32	1.92
522152--522183	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525660--525706	25	1.9	25	95	4	87	42	2	0	55	1.12
527240--527285	24	1.9	24	100	0	92	58	13	4	23	1.52
528612--528652	21	1.9	22	85	5	57	24	4	4	65	1.32
530194--530231	19	2.0	20	94	5	69	52	18	2	26	1.58
541201--541428	114	2.0	114	93	0	393	37	15	10	36	1.82
543775--543825	20	2.8	17	81	16	66	25	19	33	21	1.97
543778--543817	20	2.0	20	100	0	80	25	15	35	25	1.94
544628--544667	21	1.9	21	89	0	62	27	12	20	40	1.88
544747--544786	21	1.9	21	85	10	55	22	15	27	35	1.94
546915--546994	3	27.3	3	85	9	103	62	1	0	36	1.03

Tables:   1   2   3   4   5