genome.fa.s3421.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003421.1 Hibiscus syriacus cultivar Beakdansim tig00007204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  882701

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 526 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706848--706895	10	4.8	10	84	0	69	47	0	14	37	1.44
706848--706895	20	2.4	20	96	0	87	47	0	14	37	1.44
707246--707278	10	3.3	10	95	0	57	48	0	18	33	1.48
707382--707426	10	4.5	10	91	0	72	48	0	15	35	1.45
707382--707426	20	2.2	20	100	0	90	48	0	15	35	1.45
707402--707937	125	4.2	125	91	5	858	53	6	8	31	1.56
707527--707565	10	3.9	10	93	0	69	48	0	12	38	1.42
707662--707692	10	3.1	10	90	0	53	48	0	16	35	1.46
707870--707903	8	4.1	8	85	7	50	73	17	0	8	1.08
707913--707961	10	4.9	10	80	9	64	44	0	14	40	1.45
707913--707961	20	2.5	20	93	0	80	44	0	14	40	1.45
707968--708010	21	2.0	21	82	8	52	55	9	4	30	1.52
708059--708107	10	4.9	10	84	0	71	48	0	12	38	1.41
708059--708107	20	2.5	20	93	0	89	48	0	12	38	1.41
708205--708253	10	4.9	10	80	9	64	44	0	14	40	1.45
708205--708253	20	2.5	20	93	0	80	44	0	14	40	1.45
708350--708388	10	3.9	10	93	0	69	48	0	7	43	1.31
708351--708388	20	1.9	20	100	0	76	50	0	5	44	1.24
708485--708533	10	4.9	10	89	0	80	48	0	14	36	1.44
708485--708533	20	2.5	20	100	0	98	48	0	14	36	1.44
708631--708679	10	4.9	10	84	0	71	46	0	14	38	1.44
708631--708679	20	2.5	20	96	0	89	46	0	14	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703958--705858	126	14.0	131	88	7	2322	53	6	8	32	1.56
708660--709035	116	3.2	116	89	7	617	54	6	7	31	1.54
707000--707941	126	7.2	126	82	13	1132	53	6	8	31	1.56
708660--709171	252	2.1	247	93	3	881	54	6	7	31	1.55
707032--707398	136	2.8	124	88	6	475	54	6	7	31	1.53
709019--709055	10	3.7	10	96	0	65	51	0	16	32	1.45
709155--709203	10	4.9	10	78	9	55	42	0	16	40	1.48
709155--709203	20	2.5	20	89	0	71	42	0	16	40	1.48
709304--709347	10	4.4	10	91	0	70	52	0	13	34	1.41
709304--709349	20	2.3	20	100	0	92	50	0	13	36	1.41
709447--709485	10	3.9	10	93	0	69	48	0	12	38	1.42
709495--709690	49	4.2	47	65	16	122	54	6	7	32	1.53
709583--709621	10	3.9	10	93	0	69	48	0	12	38	1.42
709718--709786	10	6.9	10	93	0	120	49	0	13	37	1.42
709718--709786	30	2.3	30	100	0	138	49	0	13	37	1.42
709583--709921	165	2.1	165	100	0	678	52	5	9	33	1.56
709883--709921	10	3.9	10	93	0	69	48	0	12	38	1.42
710144--710192	10	4.9	10	84	0	71	46	0	14	38	1.44
710144--710192	20	2.5	20	96	0	89	46	0	14	38	1.44
710290--710338	10	4.9	10	94	0	89	48	0	12	38	1.41
710470--710512	21	2.0	21	81	0	50	53	6	6	32	1.55
710561--710609	10	4.9	10	80	9	64	44	0	14	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710561--710609	20	2.5	20	93	0	80	44	0	14	40	1.45
710707--710755	20	2.5	20	89	0	80	46	0	14	38	1.44
710707--710755	10	4.9	10	79	0	62	46	0	14	38	1.44
710853--710901	10	4.9	10	84	0	71	46	0	14	38	1.44
710853--710901	20	2.5	20	96	0	89	46	0	14	38	1.44
710999--711047	10	4.9	10	89	0	80	48	0	14	36	1.44
710999--711047	20	2.5	20	100	0	98	48	0	14	36	1.44
711019--711454	126	3.4	125	92	5	678	53	6	8	31	1.56
711145--711183	10	3.9	10	93	0	69	48	0	12	38	1.42
708903--711433	417	6.0	414	89	7	3445	53	6	8	32	1.56
711155--711498	126	2.7	120	89	8	364	54	7	8	29	1.57
715611--715665	22	2.5	21	77	13	58	41	1	1	54	1.21
717624--717672	25	2.0	25	88	4	73	67	14	2	16	1.33
720263--720321	29	2.0	29	93	0	100	15	35	15	33	1.89
720469--720513	23	2.0	22	83	12	56	31	0	4	64	1.13
720483--720521	18	2.2	18	95	4	71	33	0	2	64	1.08
730017--730092	3	25.3	3	100	0	152	67	0	0	32	0.91
730130--730168	2	19.5	2	100	0	78	51	0	0	48	1.00
730196--730285	35	2.6	35	84	8	105	48	6	1	43	1.36
730218--730348	58	2.2	60	87	6	185	45	5	2	47	1.38
730251--730308	23	2.5	23	83	10	66	48	5	1	44	1.35
730287--730451	41	4.2	40	85	6	212	44	5	2	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730277--730524	38	6.6	38	81	13	223	44	7	2	45	1.43
730417--730441	13	1.9	13	100	0	50	52	8	0	40	1.31
730373--730522	68	2.2	68	85	6	203	47	8	1	42	1.42
730412--730478	30	2.2	31	94	2	118	46	8	1	43	1.44
738055--738091	15	2.4	16	95	4	67	83	0	2	13	0.74
739398--739431	18	1.9	17	88	5	50	70	2	0	26	1.01
739534--739561	14	2.0	14	100	0	56	42	7	7	42	1.59
739457--739797	39	9.2	38	80	13	322	45	7	1	45	1.42
739609--739719	14	8.5	13	67	16	59	46	5	0	47	1.25
739645--739790	69	2.1	69	87	6	206	47	8	0	43	1.38
739684--739746	30	2.1	31	87	3	92	46	6	1	46	1.38
739996--740029	7	4.6	7	89	10	50	0	14	0	85	0.60
739996--740043	8	5.9	8	76	13	53	6	12	0	81	0.87
739996--740029	15	2.3	15	94	0	59	0	14	0	85	0.60
740072--740100	14	2.1	14	100	0	58	6	20	0	72	1.07
740528--740583	19	2.8	20	75	22	64	21	21	7	50	1.72
740428--740747	119	2.7	117	83	4	390	25	20	15	39	1.91
740992--741289	101	2.9	101	87	4	420	38	10	19	31	1.85
746465--746823	59	6.1	59	72	9	184	30	22	11	35	1.90
746565--746823	117	2.2	118	82	4	292	30	23	11	34	1.90
751467--751597	55	2.5	52	82	7	158	32	19	7	41	1.79
751635--755359	81	46.1	81	87	1	5134	30	22	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756828--756883	20	2.8	20	91	0	85	23	25	19	32	1.98
763050--763084	18	1.9	18	94	0	61	25	34	20	20	1.96
763070--763146	22	3.5	22	80	7	84	28	29	23	18	1.97
763682--763733	20	2.6	20	93	0	86	26	21	19	32	1.97
763926--763968	22	2.1	19	87	12	59	37	23	2	37	1.68
764908--764959	20	2.6	21	78	9	54	25	23	17	34	1.96
774261--774306	3	15.3	3	100	0	92	67	0	0	32	0.91
774312--774367	30	1.9	28	85	7	76	62	5	0	32	1.18
774390--774479	35	2.6	34	81	11	110	46	7	1	44	1.39
774445--774502	23	2.5	23	86	5	73	46	6	1	44	1.40
774471--774646	38	4.5	38	82	11	194	42	6	2	48	1.40
774481--774643	83	2.0	82	88	1	245	42	5	2	49	1.39
774610--774672	28	2.2	29	94	2	110	46	9	1	42	1.46
774571--774712	66	2.1	68	89	5	218	45	9	1	42	1.46
774639--774718	38	2.1	37	88	2	115	45	11	1	42	1.48
783441--783477	15	2.4	16	95	4	67	83	0	2	13	0.74
783609--783643	18	1.9	18	88	0	52	82	2	2	11	0.88
784865--785048	14	14.5	13	65	19	50	45	5	2	46	1.42
784825--785050	75	3.0	74	81	9	269	45	7	2	45	1.43
784825--785127	39	8.2	37	76	15	252	45	7	1	44	1.44
785013--785075	30	2.1	31	87	3	92	46	6	1	46	1.38
784974--785120	70	2.1	72	87	5	212	47	8	0	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784975--785121	68	2.1	69	85	7	192	47	8	0	43	1.38
785326--785371	7	5.9	8	80	10	51	4	13	0	82	0.81
785339--785395	25	2.3	24	82	8	62	10	15	0	73	1.09
785399--785427	14	2.1	14	100	0	58	6	20	0	72	1.07
785856--785912	19	2.9	21	75	21	68	21	21	7	50	1.71
785779--786075	120	2.5	118	83	6	373	26	19	14	39	1.90
786322--786618	101	2.9	102	87	3	429	38	10	18	32	1.85
786550--786694	66	2.2	67	80	10	165	39	11	19	29	1.87
797443--797801	59	6.1	60	72	11	192	30	22	11	35	1.89
797543--797801	117	2.2	117	82	4	290	30	23	10	35	1.89

Tables:   1   2   3   4   5