genome.fa.s3421.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003421.1 Hibiscus syriacus cultivar Beakdansim tig00007204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  882701

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 526 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797633--797801	58	2.9	57	75	7	144	32	23	10	33	1.88
802404--802532	51	2.4	54	81	10	158	31	18	8	41	1.81
802595--806025	81	42.8	80	85	3	4332	30	22	11	34	1.90
807622--807677	20	2.8	20	94	0	94	23	25	21	30	1.99
807662--807809	66	2.2	66	81	8	167	29	20	18	32	1.96
813724--813799	22	3.5	22	78	5	84	28	27	23	19	1.98
814322--814373	20	2.6	20	93	0	86	26	21	19	32	1.97
815549--815600	20	2.6	21	78	9	54	25	23	17	34	1.96
825508--825591	22	3.8	22	76	9	80	25	29	25	20	1.99
825519--825568	23	2.2	23	89	3	75	22	36	22	20	1.96
825948--825974	10	2.7	10	100	0	54	37	7	0	55	1.28
827150--827189	18	2.2	18	86	8	55	52	25	22	0	1.47
833143--833214	37	2.0	36	94	2	126	20	16	30	31	1.95
833145--833214	17	3.7	19	84	9	99	20	17	30	32	1.95
833146--833229	36	2.3	37	87	4	116	23	16	27	32	1.96
833241--833279	20	2.0	20	94	0	69	23	15	30	30	1.95
834326--834367	21	2.1	20	86	8	59	45	14	11	28	1.80
835196--835224	5	5.8	5	100	0	58	41	17	0	41	1.49
835219--835257	14	2.7	15	80	8	53	28	5	0	66	1.12
837248--837335	29	3.0	29	77	9	88	32	4	2	60	1.30
837595--837670	29	2.6	29	81	10	84	52	2	11	32	1.52
837610--837682	29	2.5	28	80	13	76	50	2	8	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840852--840918	29	2.4	28	80	5	71	55	0	14	29	1.40
849431--849460	2	15.0	2	100	0	60	50	0	0	50	1.00
851150--851196	19	2.4	19	89	3	67	38	0	0	61	0.96
851150--851208	16	3.2	18	79	16	68	37	0	1	61	1.07
851150--851196	3	14.7	3	82	12	58	38	0	0	61	0.96
853617--853688	30	2.4	30	90	0	108	31	23	20	23	1.98
853676--853802	63	2.0	62	87	4	184	30	18	18	31	1.96
853677--853799	31	3.9	32	76	12	128	30	18	19	31	1.96
862822--862980	86	1.9	85	86	4	230	29	23	20	26	1.99
862822--863009	86	2.3	80	82	8	200	29	22	20	27	1.98
863143--863471	85	3.9	85	79	4	322	34	22	18	24	1.96
864036--864333	46	6.6	46	72	14	199	25	26	18	29	1.98
864432--864527	40	2.4	40	85	3	122	23	31	17	27	1.97
864732--864775	7	6.6	7	92	5	65	36	0	0	63	0.95
864732--864785	3	16.7	3	78	14	54	37	0	1	61	1.07
864732--864785	19	2.7	19	85	5	63	37	0	1	61	1.07
864737--864796	26	2.3	28	76	21	51	36	0	3	60	1.14
864731--864797	29	2.3	28	80	14	73	37	0	2	59	1.13
875008--875076	30	2.2	30	82	15	86	37	5	15	40	1.72
875017--875076	29	2.0	31	90	6	97	36	6	15	41	1.73
875141--875207	19	3.5	19	80	8	73	37	11	13	37	1.82
875312--875353	21	2.0	21	90	0	66	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880885--880979	38	2.5	38	87	3	129	14	9	34	41	1.79
882532--882582	22	2.3	23	89	3	77	15	3	19	60	1.50

Tables:   1   2   3   4   5

The End!