genome.fa.s3696.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003696.1 Hibiscus syriacus cultivar Beakdansim tig00007902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251402

Tables:   1   2   3   4   

This is table  2  of  4  ( 468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178853--178983	41	3.2	40	73	10	111	17	6	22	53	1.66
178974--179038	14	4.7	13	81	11	76	12	1	32	53	1.47
178971--179038	28	2.4	28	85	4	93	11	1	33	52	1.47
178994--179115	56	2.2	56	85	5	158	15	4	27	52	1.61
179055--179124	35	2.0	35	85	0	95	18	7	27	47	1.75
179076--179171	28	3.4	27	79	9	86	15	5	27	52	1.64
179130--179172	14	3.1	14	75	0	50	11	0	30	58	1.34
179134--179178	21	2.1	21	95	0	81	11	0	26	62	1.29
179097--179444	28	11.9	28	65	14	87	13	6	28	52	1.65
179097--179207	56	2.0	56	82	10	138	18	4	25	52	1.64
179194--179220	14	1.9	14	100	0	54	7	0	37	55	1.28
179203--179263	21	2.9	21	76	9	61	11	9	27	50	1.70
179224--179339	14	8.3	14	68	7	74	11	11	29	48	1.73
179197--179291	49	1.9	49	85	8	131	10	10	26	52	1.68
179204--179284	42	1.9	42	84	0	108	12	11	24	51	1.71
179378--179466	7	12.7	7	78	0	88	5	4	34	55	1.44
179358--179430	21	3.5	21	67	17	53	8	5	30	56	1.51
179351--179438	42	2.1	41	85	8	115	10	4	28	56	1.52
179371--179437	21	3.2	21	81	8	91	7	4	34	53	1.49
179475--179514	21	1.9	21	85	10	55	22	7	15	55	1.65
179512--179550	14	2.8	14	88	0	60	7	0	17	74	1.05
179520--179563	21	2.2	20	83	4	52	11	0	22	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179581--179618	20	1.9	20	88	0	58	18	2	18	60	1.48
179595--179675	34	2.4	33	84	12	94	19	4	18	56	1.59
179671--179710	21	1.9	21	89	0	62	17	10	20	52	1.72
179699--179765	21	3.1	21	72	8	64	11	10	25	52	1.70
179704--179764	14	4.4	14	76	12	54	11	9	27	50	1.70
179692--179758	35	1.9	35	84	6	91	11	10	25	52	1.70
179753--179806	14	3.8	14	82	2	63	1	1	31	64	1.14
179804--179931	35	3.7	34	79	7	107	15	8	21	53	1.68
179887--179944	28	2.1	28	83	0	71	15	8	20	55	1.67
180001--180206	21	9.8	21	69	7	87	19	5	24	50	1.68
180014--180074	28	2.2	28	85	5	79	21	4	21	52	1.65
179986--180111	63	2.0	63	85	0	171	22	5	24	47	1.72
180055--180134	42	1.9	42	84	0	106	23	10	25	41	1.85
180006--180130	63	2.0	63	82	3	153	23	7	23	46	1.77
180050--180143	42	2.2	42	74	7	100	22	8	23	45	1.79
180132--180297	7	23.7	7	71	4	75	16	4	24	53	1.62
180106--180256	35	4.3	36	73	5	94	15	5	25	52	1.65
180131--180255	42	3.0	42	81	6	137	13	4	28	54	1.57
180174--180306	70	1.9	70	84	6	180	18	6	24	51	1.69
180273--180339	28	2.4	28	85	5	91	22	8	19	49	1.76
180246--180319	21	3.5	21	83	0	85	20	6	20	52	1.68
180316--180374	21	2.8	21	76	5	57	18	13	13	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180394--180445	14	3.7	14	71	0	50	15	3	25	55	1.57
180379--180536	28	5.4	28	74	12	129	17	6	23	51	1.69
180471--180544	14	5.3	14	74	9	53	24	6	17	51	1.69
180506--180606	35	2.9	35	84	0	139	15	6	24	52	1.67
180491--180551	14	4.4	14	85	0	68	21	9	19	49	1.77
180415--180599	21	9.1	21	69	8	105	17	7	23	51	1.69
180562--180607	21	2.2	21	96	0	83	13	6	26	54	1.62
180568--180671	21	4.9	21	75	4	75	16	11	21	50	1.76
180590--180672	43	1.9	43	85	4	114	18	13	18	50	1.78
180759--180941	7	26.3	7	73	3	73	10	4	30	55	1.53
180759--180941	21	8.8	21	70	10	99	10	4	30	55	1.53
180780--180855	14	5.4	14	83	0	89	10	2	31	55	1.48
180987--181144	21	7.6	21	73	7	72	16	4	24	55	1.60
181177--181249	28	2.5	28	80	4	83	15	10	30	43	1.80
181277--181307	14	2.2	14	94	0	53	19	9	19	51	1.74
181214--181350	21	6.5	21	66	6	62	15	9	27	48	1.75
181298--181351	14	3.9	14	80	0	63	11	5	31	51	1.60
181298--181364	14	4.7	14	81	1	62	13	5	28	52	1.64
181324--181420	35	2.8	35	80	4	106	18	6	23	51	1.68
181345--181392	21	2.3	21	85	0	60	22	4	18	54	1.61
181375--181447	28	2.6	28	80	8	94	17	8	21	52	1.71
181401--181496	21	4.6	21	65	2	59	17	8	19	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181500--181552	21	2.5	21	84	0	61	24	7	16	50	1.71
181486--181524	14	2.8	14	88	0	51	20	5	23	51	1.67
181717--181769	21	2.5	21	87	0	79	13	9	28	49	1.73
181608--181749	14	10.2	14	69	4	54	16	12	22	48	1.79
181753--181785	7	4.7	7	92	0	57	3	0	36	60	1.12
181753--181979	14	16.2	14	68	0	76	15	5	27	51	1.65
181766--182120	28	12.7	28	70	12	131	16	5	26	51	1.66
181863--181916	21	2.6	21	84	0	63	16	7	27	48	1.73
181904--181979	7	10.9	7	69	5	55	17	2	25	55	1.55
181870--181958	35	2.5	35	83	0	106	16	5	24	52	1.65
181941--182022	21	3.9	21	77	6	67	17	7	21	53	1.67
181921--182022	14	6.8	14	68	14	60	16	6	22	53	1.66
182047--182142	7	13.6	7	73	2	75	9	2	29	59	1.40
182047--182169	14	8.7	14	70	12	90	12	1	29	56	1.45
182047--182162	7	16.4	7	70	12	58	12	1	28	57	1.44
182104--182162	21	2.8	21	85	12	68	13	1	27	57	1.46
182167--182213	14	3.4	14	78	0	58	29	10	10	48	1.71
182180--182204	7	3.6	7	100	0	50	40	12	0	48	1.40
182202--182268	7	9.6	7	74	6	64	4	5	34	55	1.45
182202--182268	21	3.2	21	89	10	102	4	5	34	55	1.45
182290--182344	21	2.6	21	88	0	83	18	1	27	52	1.55
182199--182325	35	3.6	35	75	4	112	14	6	28	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182313--182379	35	1.9	35	93	0	116	10	2	26	59	1.45
182390--182449	21	2.9	21	85	7	77	20	11	18	50	1.77
182390--182465	28	2.7	28	81	0	80	19	11	19	48	1.79
182495--182541	7	6.7	7	80	0	58	14	12	25	46	1.80
182474--182604	35	3.9	33	73	20	112	17	10	25	46	1.80
182503--182547	14	3.2	14	74	0	54	20	11	20	48	1.79
182493--182610	28	4.0	28	75	18	112	17	10	25	46	1.79
182524--182633	21	5.2	21	68	7	71	19	8	22	50	1.74
182493--182624	63	2.1	63	85	5	178	16	9	25	47	1.77
182565--182624	28	2.1	28	93	0	102	16	8	23	51	1.71
182490--182624	35	4.1	34	72	16	113	16	9	25	48	1.76
182564--182673	49	2.2	48	81	7	132	20	7	22	49	1.74
182500--182673	28	6.2	28	70	6	75	19	8	24	47	1.77
182626--182724	35	2.8	34	77	8	92	21	9	22	47	1.78
182664--182814	21	7.2	21	64	12	60	17	6	23	52	1.68
182748--182868	7	17.4	7	68	8	68	14	3	28	54	1.55
182774--182854	35	2.3	34	83	6	99	14	3	27	54	1.57
182795--182868	21	3.5	21	73	0	76	12	2	29	55	1.50
182828--182965	56	2.5	56	82	7	172	15	4	28	51	1.63
182912--182971	20	2.9	21	82	5	77	20	8	25	46	1.78
182914--182979	21	3.2	20	77	12	62	18	9	24	48	1.76
182908--182986	41	1.9	42	84	7	108	17	7	25	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182949--183008	28	2.1	28	87	0	84	13	6	26	53	1.64
182977--183027	21	2.4	21	90	0	75	17	3	21	56	1.57
182935--183044	49	2.3	49	83	1	141	17	6	25	50	1.69
183032--183123	21	4.4	21	78	5	87	10	10	30	47	1.73
182935--183070	49	2.8	49	80	7	134	16	7	25	50	1.71
183186--183267	7	11.7	7	76	0	74	7	3	32	56	1.45
183166--183267	14	7.3	14	72	4	64	7	4	30	56	1.49
183185--183267	21	4.0	21	80	0	94	8	3	32	55	1.47
183276--183315	21	1.9	21	85	10	55	22	7	17	52	1.69
183256--183393	63	2.2	64	76	6	138	20	5	17	57	1.58

Tables:   1   2   3   4