genome.fa.s3696.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003696.1 Hibiscus syriacus cultivar Beakdansim tig00007902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251402

Tables:   1   2   3   4   

This is table  3  of  4  ( 468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183468--183535	21	3.2	21	79	4	75	16	7	26	50	1.71
183503--183563	14	4.4	14	73	8	52	9	11	27	50	1.70
183553--183593	14	2.9	14	88	0	64	0	0	29	70	0.87
183623--183662	21	1.9	21	84	0	53	17	10	20	52	1.72
183721--183774	21	2.6	21	87	0	81	14	9	27	48	1.75
183624--183886	98	2.7	97	81	1	267	17	8	24	49	1.74
183754--183808	28	2.0	28	85	0	74	12	5	32	49	1.64
183754--183835	14	5.9	14	72	11	60	15	6	28	50	1.68
183900--183982	42	2.0	42	83	4	105	15	3	25	55	1.57
183993--184027	14	2.5	14	90	0	61	14	8	28	48	1.73
183973--184108	28	5.1	28	73	18	94	19	8	23	49	1.74
184008--184067	21	2.9	21	92	0	93	18	10	21	50	1.76
184029--184066	14	2.7	14	83	0	58	18	7	21	52	1.70
184006--184067	7	8.9	7	70	0	52	17	9	24	48	1.77
184177--184222	21	2.2	21	88	0	65	4	2	32	60	1.28
184177--184223	7	6.7	7	82	0	58	4	2	34	59	1.29
184190--184242	21	2.5	20	82	11	54	11	3	28	56	1.51
184163--184304	35	4.1	35	75	12	114	13	5	25	55	1.59
184294--184396	21	5.2	21	73	15	94	13	9	26	50	1.72
184320--184423	49	2.1	49	81	0	118	15	6	25	51	1.67
184376--184423	14	3.4	14	82	0	60	16	8	27	47	1.75
184316--184410	35	2.7	35	80	0	109	12	8	25	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184378--184439	28	2.2	28	82	5	72	16	11	24	48	1.78
184386--184445	21	2.9	21	73	9	59	11	10	26	51	1.69
184336--184444	49	2.2	49	86	0	155	12	8	26	52	1.67
184450--184502	21	2.5	21	85	11	65	9	3	20	66	1.37
184576--184676	7	14.4	7	84	0	103	7	0	32	58	1.34
184610--184698	14	6.4	14	77	5	72	13	4	28	53	1.59
184556--184683	21	6.1	20	72	12	78	11	2	29	56	1.48
184834--184930	21	4.6	21	76	5	79	14	5	24	55	1.59
184843--184987	21	6.9	20	71	10	67	15	5	22	55	1.61
185029--185063	14	2.4	15	85	9	54	17	5	28	48	1.69
185116--185146	14	2.2	14	100	0	62	19	6	19	54	1.65
185141--185181	21	2.0	21	85	0	55	12	4	34	48	1.62
185165--185212	21	2.3	21	85	0	69	22	10	16	50	1.76
185207--185258	21	2.5	21	77	0	59	15	7	21	55	1.64
185192--185277	42	2.0	42	84	4	111	15	6	25	52	1.67
185450--185535	28	3.1	27	78	9	84	19	12	20	46	1.83
185487--185631	69	2.1	70	81	3	177	17	8	24	49	1.75
185599--185629	14	2.2	14	100	0	62	6	0	32	61	1.21
185613--185728	21	5.9	21	67	13	75	19	5	22	52	1.66
185836--185889	14	3.9	14	85	0	72	20	12	20	46	1.83
185836--185909	28	2.6	28	86	0	85	20	12	21	45	1.83
185858--185905	21	2.3	20	75	10	51	18	14	22	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185844--185909	28	2.4	28	89	0	96	18	13	22	45	1.84
185893--185972	21	3.8	21	76	11	67	10	7	28	53	1.61
185915--186010	35	2.7	35	79	3	104	14	6	25	54	1.63
185963--186002	14	2.9	14	92	0	71	17	2	22	57	1.52
185954--186088	28	5.1	28	72	13	97	16	4	28	51	1.64
185977--186023	21	2.2	21	84	0	58	17	6	25	51	1.69
186033--186080	21	2.3	21	74	0	51	12	6	27	54	1.61
186039--186164	28	4.5	28	77	4	92	14	10	27	47	1.76
186130--186190	14	4.4	14	80	0	68	16	9	24	49	1.76
186110--186292	35	5.0	35	72	15	120	15	8	24	51	1.70
186222--186280	28	2.1	27	84	3	73	15	5	25	54	1.61
186451--186580	35	3.7	35	78	2	109	15	7	26	50	1.71
186516--186546	7	4.4	7	91	0	53	3	0	35	61	1.12
186555--186648	37	2.6	37	74	6	93	23	3	21	52	1.61
186643--186745	28	3.7	28	72	3	75	12	5	26	55	1.59
186729--186787	28	2.1	28	90	6	93	15	6	22	55	1.63
186684--186789	49	2.2	49	79	6	117	15	6	24	53	1.65
186743--186803	28	2.2	28	84	0	77	21	6	19	52	1.68
186736--186803	14	4.9	14	72	0	64	20	5	19	54	1.64
186882--186963	7	11.7	7	74	0	65	7	4	32	54	1.49
186881--186963	21	4.0	21	79	0	85	8	4	32	54	1.52
186961--187011	21	2.5	20	87	9	68	25	5	13	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186952--187089	63	2.2	64	77	6	147	21	5	16	57	1.58
187105--187169	33	2.0	32	84	3	85	16	4	24	53	1.62
187159--187260	21	4.9	21	71	5	73	12	7	27	51	1.67
187137--187235	35	2.8	35	77	7	94	17	7	26	49	1.72
187251--187289	7	5.7	7	87	6	53	0	0	30	69	0.89
187249--187289	13	3.1	13	89	3	64	0	0	31	68	0.90
187277--187384	35	3.1	34	79	9	103	14	10	24	50	1.73
187327--187372	21	2.2	21	84	0	56	17	15	19	47	1.82
187417--187475	21	2.8	21	81	0	73	10	8	25	55	1.61
187464--187552	35	2.5	35	76	7	108	20	5	25	48	1.71
187508--187545	14	2.7	14	95	0	67	18	5	21	55	1.62
187332--187622	49	5.9	49	74	4	183	17	7	24	50	1.72
187522--187833	21	14.5	21	65	11	96	18	6	25	50	1.70
187526--187650	35	3.6	35	73	6	101	20	5	27	46	1.73
187662--187832	7	24.4	7	68	7	51	16	5	24	53	1.63
187557--187688	42	3.1	42	71	5	113	21	6	23	48	1.72
187662--187762	42	2.4	41	82	9	123	14	2	24	57	1.52
187759--187793	14	2.5	14	90	0	61	14	8	28	48	1.73
187739--187854	28	4.4	28	71	20	88	17	7	25	50	1.72
187795--187832	14	2.7	14	83	0	58	18	7	21	52	1.70
187772--187833	7	8.9	7	70	0	52	17	9	24	48	1.77
187808--187874	28	2.4	28	82	5	82	25	8	17	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187943--187988	21	2.2	21	88	0	65	4	2	32	60	1.28
187943--187989	7	6.7	7	82	0	58	4	2	34	59	1.29
187956--188008	21	2.5	20	82	11	54	11	3	28	56	1.51
187929--188070	35	4.1	35	75	12	114	13	5	25	55	1.59
188060--188162	21	5.2	21	73	15	94	13	9	26	50	1.72
188086--188189	49	2.1	49	83	0	127	14	6	25	52	1.66
188138--188189	14	3.7	14	84	0	77	13	7	25	53	1.65
188082--188176	35	2.7	35	80	0	109	12	8	25	53	1.66
188144--188205	28	2.2	28	82	5	72	14	11	24	50	1.75
188152--188211	21	2.9	21	71	0	57	10	10	26	53	1.66
188102--188210	49	2.2	49	88	0	164	11	8	26	53	1.66
188216--188267	21	2.5	21	87	12	72	9	3	23	63	1.41
188342--188449	7	15.4	7	87	0	117	6	1	34	57	1.35
188503--188568	7	9.3	7	75	3	51	10	3	33	53	1.51
188502--188556	28	2.0	28	85	0	74	12	3	29	54	1.55
188514--188568	21	2.5	22	85	5	76	12	0	34	52	1.40
188623--188771	21	7.1	21	75	1	102	14	6	24	55	1.62
188908--188956	21	2.3	21	78	0	53	16	8	28	46	1.75
188896--188928	14	2.4	14	100	0	66	21	9	18	51	1.73
188903--188963	14	4.4	14	78	0	50	14	6	27	50	1.68
188921--188961	21	2.0	21	90	0	64	12	7	34	46	1.69
188923--188975	14	3.8	14	76	0	52	16	7	24	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188945--188992	21	2.3	21	85	0	69	22	10	16	50	1.76
189008--189074	21	3.2	20	75	8	62	20	8	19	50	1.74
189223--189308	28	3.1	26	77	12	75	18	12	22	46	1.83
189260--189404	69	2.1	70	81	3	177	17	8	24	49	1.75
189372--189402	14	2.2	14	100	0	62	6	0	32	61	1.21
189386--189501	21	5.9	21	66	19	70	20	5	21	52	1.66
189366--189508	56	2.6	56	81	6	191	19	4	23	52	1.65
189561--189655	28	3.4	28	77	2	75	17	9	21	51	1.73
189540--189605	7	9.4	7	77	6	53	12	4	24	59	1.52
189609--189662	14	3.9	14	85	0	72	20	12	20	46	1.83

Tables:   1   2   3   4