genome.fa.s4123.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004123.1 Hibiscus syriacus cultivar Beakdansim tig00009023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596068

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1036 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1478544--1478674	19	7.7	19	64	23	85	15	22	19	43	1.87
1478548--1478674	33	3.9	32	84	8	175	15	22	18	43	1.88
1478541--1478673	66	2.0	66	94	0	230	17	21	18	42	1.90
1480962--1480986	12	2.1	12	100	0	50	0	28	0	72	0.86
1481161--1481214	24	2.2	24	90	0	81	38	20	16	24	1.92
1482274--1482331	20	2.9	20	94	0	98	37	22	22	17	1.93
1482350--1482413	19	3.6	19	82	14	75	14	20	20	45	1.85
1482501--1482537	14	2.6	14	86	0	56	48	21	0	29	1.50
1484386--1484503	20	6.4	19	74	13	86	41	23	20	14	1.89
1484460--1484517	14	3.9	14	77	16	62	48	24	17	10	1.78
1484444--1484522	32	2.4	33	93	2	133	46	22	18	11	1.81
1484551--1484640	14	5.9	14	72	19	72	13	17	21	47	1.81
1484534--1484654	32	3.7	33	93	2	201	13	19	20	47	1.82
1484640--1484695	20	2.8	19	78	7	58	14	23	23	39	1.91
1485177--1485221	18	2.5	18	88	0	72	13	15	44	26	1.83
1486540--1486577	20	1.9	20	88	0	58	50	21	15	13	1.78
1486841--1486884	22	2.0	22	95	0	79	18	15	45	20	1.85
1487072--1487124	20	2.7	20	91	5	81	26	18	26	28	1.98
1487052--1487166	20	5.7	19	77	9	77	24	17	23	34	1.96
1487155--1487247	20	4.5	21	75	4	91	17	25	18	38	1.92
1487089--1487228	41	3.4	42	80	3	135	20	22	20	36	1.95
1487155--1487247	41	2.3	41	98	0	177	17	25	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1493882--1493934	23	2.4	22	87	6	81	33	16	20	28	1.95
1495478--1495538	19	3.3	19	73	17	74	3	14	31	50	1.59
1495482--1495545	18	3.6	18	75	23	71	4	14	29	51	1.62
1499963--1500010	19	2.5	19	96	0	87	16	27	27	29	1.97
1502080--1502148	34	2.0	34	94	0	120	47	26	21	4	1.69
1503230--1503268	20	2.0	20	85	10	53	25	7	7	58	1.52
1505120--1505222	38	2.7	37	92	5	163	34	10	10	43	1.74
1506651--1506703	26	2.2	24	83	10	63	50	11	13	24	1.73
1510272--1510331	30	2.0	30	96	0	111	13	21	33	31	1.92
1513926--1514011	15	6.0	15	70	10	72	46	2	1	50	1.21
1514068--1514107	19	2.1	19	100	0	80	35	0	5	60	1.19
1521204--1521261	20	2.7	20	81	10	62	27	22	27	22	1.99
1522934--1523014	9	8.7	9	84	8	108	13	24	30	30	1.94
1522934--1523014	19	4.3	18	85	6	108	13	24	30	30	1.94
1522934--1523014	28	2.9	28	87	7	103	13	24	30	30	1.94
1530174--1530281	9	11.3	9	80	11	117	13	26	27	31	1.94
1530173--1530211	21	1.9	20	84	5	51	20	25	20	33	1.97
1530203--1530275	19	3.8	19	96	0	128	12	24	31	31	1.92
1547150--1547214	2	32.5	2	90	0	103	50	44	0	4	1.22
1547150--1547222	12	6.2	12	90	6	114	50	42	0	6	1.29
1547890--1547932	14	2.9	15	80	13	54	69	23	6	0	1.12
1548442--1548488	21	2.2	21	88	0	76	21	23	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1548449--1548494	21	2.2	21	84	0	56	23	23	19	32	1.97
1548634--1548675	22	1.9	22	90	0	66	26	35	11	26	1.91
1550942--1550983	4	10.5	4	84	0	57	26	2	2	69	1.13
1551123--1551245	42	2.9	42	80	9	117	23	35	19	21	1.96
1551178--1551248	21	3.5	20	73	9	54	22	39	22	15	1.92
1551128--1551225	21	4.7	21	72	8	74	25	34	19	20	1.96
1552596--1552735	66	2.2	62	83	7	176	30	0	16	52	1.49
1553033--1553121	39	2.3	39	90	0	142	19	14	16	49	1.80
1553836--1553910	25	3.0	25	98	0	141	44	22	8	25	1.80
1553835--1553909	14	5.8	13	67	19	50	44	24	8	24	1.80
1554389--1554429	18	2.3	18	91	0	64	17	2	26	53	1.56
1556680--1556733	24	2.2	24	93	0	90	40	20	18	20	1.91
1557637--1557687	19	2.7	19	90	6	68	31	9	23	35	1.87
1557637--1557766	20	6.6	20	72	12	90	25	13	25	36	1.92
1561221--1561252	2	16.0	2	100	0	64	50	0	0	50	1.00
1569885--1569961	13	5.9	13	80	15	79	58	1	1	38	1.15
1569987--1570040	23	2.3	24	80	3	74	44	3	7	44	1.49
1570291--1570330	11	3.5	11	83	6	53	47	5	7	40	1.54
1570588--1570640	20	2.7	20	90	0	88	43	26	20	9	1.82
1579168--1579195	12	2.3	12	100	0	56	85	0	14	0	0.59
1581106--1581136	2	16.0	2	93	6	55	51	0	0	48	1.00
1581318--1581352	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581936--1581977	22	1.9	22	85	0	57	11	21	0	66	1.23
1582766--1582811	18	2.6	18	74	16	51	76	2	2	19	1.00
1584644--1584713	7	9.7	7	76	17	54	5	14	1	78	1.00
1584650--1584696	20	2.2	20	85	7	58	2	14	0	82	0.75
1584644--1584705	28	2.2	27	85	5	79	4	12	1	80	0.94
1584631--1584713	43	1.9	43	80	11	98	8	12	1	78	1.02
1590553--1590628	23	3.3	23	86	0	107	31	23	21	23	1.98
1590626--1590666	21	2.0	21	85	0	55	34	24	12	29	1.91
1590804--1590854	21	2.4	21	90	0	75	29	21	9	39	1.85
1591242--1591363	53	2.3	54	84	2	149	29	22	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9

The End!