genome.fa.s4578.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004578.1 Hibiscus syriacus cultivar Beakdansim tig00010204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1248949

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 816 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074511--1074613	41	2.5	41	93	0	170	37	26	19	16	1.92
1074511--1074617	21	5.2	21	69	4	92	38	27	18	15	1.91
1074374--1074630	142	1.8	139	91	2	415	35	23	20	21	1.96
1074791--1074821	5	6.4	5	96	3	55	0	41	22	35	1.54
1074822--1074881	6	10.5	6	89	10	99	0	15	51	33	1.43
1074826--1074881	27	2.1	27	100	0	112	0	14	51	33	1.42
1074832--1074875	21	2.1	21	100	0	88	0	13	52	34	1.41
1074966--1075091	41	3.0	41	90	3	155	38	23	19	18	1.93
1074991--1075091	41	2.5	41	96	0	184	38	24	17	18	1.93
1075014--1075083	21	3.4	21	72	4	79	35	27	15	21	1.94
1074991--1075237	20	12.1	21	64	11	93	36	24	19	19	1.95
1075131--1075233	41	2.5	41	93	0	170	37	26	19	16	1.92
1074991--1075250	142	1.8	142	93	0	448	35	23	20	20	1.96
1078477--1078591	57	2.0	57	91	0	185	33	29	22	13	1.93
1078650--1078751	24	4.4	24	80	7	84	39	20	12	27	1.89
1091907--1091938	15	2.1	15	94	0	55	25	18	9	46	1.79
1099260--1099325	10	7.0	9	76	13	62	81	0	18	0	0.68
1099254--1099317	18	3.7	18	74	18	64	81	0	18	0	0.70
1099259--1099324	22	3.0	22	80	12	82	83	0	16	0	0.65
1099255--1099319	32	2.0	32	90	0	103	80	0	20	0	0.72
1100478--1101105	83	7.6	83	95	0	1112	28	11	21	38	1.89
1102044--1102595	113	4.9	113	92	2	864	38	14	18	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1102814--1102864	15	3.3	16	76	15	54	39	0	1	58	1.09
1106074--1106194	33	3.9	32	84	13	171	45	28	8	17	1.77
1106074--1106209	60	2.1	65	85	9	183	44	30	8	16	1.77
1106136--1106200	27	2.4	27	92	2	85	44	29	9	16	1.79
1106185--1106243	31	1.9	30	86	3	82	37	25	8	28	1.85
1109028--1109078	3	17.0	3	88	8	77	64	0	0	35	0.94
1109235--1109510	119	2.3	120	90	3	425	25	17	16	40	1.90
1109431--1110106	113	6.0	112	83	4	801	30	18	13	38	1.88
1109432--1110098	339	2.0	338	86	1	942	30	18	12	38	1.88
1110921--1111199	91	3.0	91	96	2	506	34	21	15	28	1.93
1112178--1112239	9	7.0	8	77	18	61	0	17	0	82	0.67
1112180--1112235	27	2.1	26	90	3	85	0	17	0	82	0.68
1119383--1119414	15	2.1	15	94	0	55	46	9	18	25	1.79
1122696--1122790	27	3.3	28	72	17	72	64	1	7	27	1.27
1124845--1124904	3	20.0	3	86	6	86	63	0	0	36	0.95
1128363--1128419	23	2.5	23	97	0	105	50	22	3	22	1.64
1130393--1130450	23	2.8	21	84	12	75	18	25	34	20	1.96
1139415--1139470	28	2.0	28	92	0	94	32	8	26	32	1.87
1139493--1139599	29	3.7	29	82	0	124	32	16	20	29	1.95
1139808--1139941	36	3.7	36	82	2	144	17	15	28	38	1.91
1141461--1141510	16	3.1	16	85	0	55	28	6	34	32	1.81
1141998--1142057	22	2.7	21	75	12	57	35	8	1	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142034--1142089	29	1.9	29	92	0	94	37	7	0	55	1.27
1142247--1142676	2	218.5	2	81	4	462	42	0	56	0	1.06
1144274--1144362	30	2.9	30	86	1	106	57	1	4	37	1.26
1150459--1150488	13	2.2	14	94	5	53	40	0	13	46	1.43
1150502--1150535	16	2.1	17	88	5	52	20	38	0	41	1.53
1151143--1151183	18	2.3	18	95	0	73	0	29	24	46	1.53
1152397--1152456	23	2.7	23	86	2	77	20	25	30	25	1.99
1152377--1152456	22	3.7	22	76	12	76	20	25	28	26	1.99
1158539--1159023	139	3.5	138	81	7	493	42	13	12	31	1.81
1159142--1159179	20	1.9	20	84	10	51	55	15	7	21	1.66
1159710--1159752	20	2.0	23	86	13	65	55	16	11	16	1.68
1159711--1159760	22	2.3	21	83	13	57	58	12	12	18	1.64
1162153--1162441	3	95.3	3	70	13	173	63	1	5	29	1.25
1162153--1162192	16	2.6	16	88	4	55	65	0	5	30	1.14
1162156--1162446	43	6.6	43	71	17	147	63	1	5	29	1.26
1162152--1162280	46	2.7	48	81	8	122	65	2	2	29	1.17
1162165--1162407	126	1.9	131	81	12	299	63	1	5	29	1.26
1162295--1162441	29	4.5	32	73	15	131	62	0	6	29	1.26
1162561--1163099	118	4.5	119	86	4	723	25	21	15	37	1.93
1162561--1163092	237	2.2	237	86	4	743	26	21	15	36	1.93
1163055--1163123	22	3.4	22	64	25	60	13	33	11	42	1.80
1163036--1163133	39	2.5	39	96	0	178	19	27	11	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162918--1163251	157	2.1	158	91	0	535	23	24	14	37	1.92
1164365--1164421	18	3.2	18	76	14	55	5	17	0	77	0.95
1164384--1164418	10	3.4	11	92	7	56	5	20	0	74	1.02
1177978--1178026	23	2.1	23	96	0	89	22	40	8	28	1.82
1180488--1180638	74	2.0	74	100	0	302	37	16	11	35	1.85
1181412--1181485	34	2.2	34	100	0	148	21	8	27	43	1.80
1182799--1182886	41	2.2	41	87	2	133	63	10	2	23	1.37
1183239--1183266	2	14.0	2	100	0	56	50	0	0	50	1.00
1183414--1183458	23	2.0	23	86	0	63	51	6	4	37	1.49
1183690--1183728	15	2.6	14	88	8	51	56	5	5	33	1.43
1185932--1185989	29	2.0	29	80	12	66	17	8	0	74	1.06
1185946--1185993	20	2.4	19	79	6	51	14	8	0	77	0.99
1188776--1188821	11	4.2	11	86	10	67	2	10	0	86	0.64
1188776--1188811	12	3.1	12	92	4	56	2	8	0	88	0.59
1188787--1188848	20	3.2	19	84	10	74	11	8	0	80	0.90
1188775--1188841	30	2.2	29	82	12	82	8	8	0	82	0.86
1188818--1188888	7	9.9	7	89	6	90	23	5	0	70	1.08
1188818--1188905	13	6.2	15	83	11	98	22	7	0	69	1.14
1198606--1198656	20	2.8	17	80	13	66	74	1	15	7	1.13
1203183--1203212	12	2.5	12	94	0	51	0	13	3	83	0.77
1203183--1203218	13	2.8	13	91	4	56	0	16	2	80	0.83
1208818--1208860	13	3.4	13	87	6	61	34	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217366--1217403	18	2.1	18	100	0	76	15	15	23	44	1.85
1217370--1217411	18	2.3	18	91	0	66	19	16	26	38	1.92
1234484--1234526	18	2.4	18	92	0	68	34	13	11	39	1.82
1235301--1246205	303	36.0	303	88	1	15769	27	25	21	25	2.00
1245997--1246432	227	1.9	226	88	2	660	22	29	19	29	1.98
1245696--1246734	529	2.0	529	89	1	1593	24	26	21	27	1.99
1246223--1248946	303	9.0	303	88	2	3947	25	25	22	26	2.00
1246223--1248946	605	4.5	607	88	1	3947	25	25	22	26	2.00

Tables:   1   2   3   4   5   6   7

The End!