genome.fa.s4593.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004593.1 Hibiscus syriacus cultivar Beakdansim tig00010263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1592963

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 829 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--17412	7	2528.3	7	95	3	27235	39	43	3	14	1.60
17087--17129	8	5.5	8	94	5	79	11	62	25	0	1.29
18075--18403	114	2.9	114	94	0	550	31	19	15	33	1.93
19104--19148	13	3.4	13	82	14	56	4	17	0	77	0.92
29601--29656	26	2.2	26	87	6	78	60	3	5	30	1.36
31547--31594	3	15.7	3	79	12	53	64	0	0	35	0.94
31548--31601	12	4.4	12	78	17	58	66	0	0	33	0.92
31547--31602	17	3.4	16	81	11	69	66	0	0	33	0.92
31548--31598	25	2.0	26	88	11	79	66	0	0	33	0.92
36312--36394	37	2.2	37	89	0	121	31	16	20	31	1.95
41048--41130	37	2.2	37	86	0	112	32	16	19	31	1.94
48371--48432	9	6.2	9	74	20	52	38	0	0	61	0.96
48361--48442	42	2.0	42	97	0	155	41	0	0	58	0.98
54077--54108	4	7.8	4	93	6	55	75	0	3	21	0.95
54076--54108	13	2.6	13	95	4	59	72	0	6	21	1.05
54140--54166	11	2.5	11	100	0	54	77	7	0	14	0.97
54217--54270	27	2.0	27	85	7	74	79	0	5	14	0.90
54217--54269	15	3.7	15	73	16	51	79	0	5	15	0.91
55490--55533	23	1.9	23	86	9	63	52	4	2	40	1.34
63643--63692	19	2.6	19	93	0	82	30	2	10	58	1.42
64088--65250	199	5.8	199	95	0	2040	42	15	14	27	1.86
65674--65713	15	2.7	15	88	0	62	22	50	0	27	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68252--68304	24	2.2	24	86	0	70	35	3	13	47	1.61
68479--69865	200	6.9	199	84	4	1216	39	16	14	29	1.88
68533--69865	400	3.3	397	83	4	1404	39	16	14	29	1.88
69448--69500	22	2.4	22	84	9	72	32	15	11	41	1.82
69448--69489	21	2.0	21	90	4	66	30	14	11	42	1.81
68506--69866	600	2.3	600	80	5	1374	39	16	14	29	1.88
69856--69903	22	2.2	23	88	7	73	25	16	14	43	1.86
73590--73618	15	1.9	15	100	0	58	41	6	20	31	1.79
73857--73901	23	2.0	23	90	0	72	33	17	11	37	1.85
73937--73988	23	2.3	23	79	0	59	38	13	7	40	1.73
80887--80927	21	2.0	21	85	0	55	48	21	17	12	1.79
82836--82863	14	2.0	14	100	0	56	35	28	0	35	1.58
83394--83496	45	2.3	45	91	0	170	40	18	7	33	1.79
83646--83686	16	2.6	16	88	0	55	41	39	9	9	1.71
84279--84689	54	7.7	54	85	4	512	36	20	16	26	1.94
85394--85438	21	2.1	21	95	0	81	55	4	13	26	1.57
86328--86368	17	2.4	18	76	12	50	48	12	0	39	1.41
94972--95012	20	2.0	20	95	0	73	31	24	17	26	1.97
96219--96421	42	4.8	41	74	9	158	23	17	36	22	1.94
96219--96369	21	7.2	21	62	10	58	21	18	37	22	1.95
96249--96421	84	2.1	84	98	0	337	23	16	38	21	1.93
96643--96827	91	2.0	90	88	6	273	46	18	12	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98514--98673	19	8.8	19	71	15	106	44	18	23	13	1.86
98539--98626	33	2.6	33	90	1	140	38	20	27	13	1.90
98674--98718	19	2.4	19	88	0	63	8	13	26	51	1.70
99270--99309	20	2.0	20	95	0	71	32	20	27	20	1.97
99291--99385	41	2.3	41	80	3	102	20	20	23	36	1.95
100118--100151	17	2.1	17	89	10	54	38	11	17	32	1.86
105064--105432	20	18.5	20	85	4	458	34	26	18	20	1.96
106106--106152	24	2.0	24	87	8	69	25	14	21	38	1.92
108682--108940	19	14.7	19	80	15	315	47	17	20	14	1.82
108682--108962	52	5.4	55	86	9	289	46	17	20	14	1.83
108682--108962	33	8.1	36	81	15	269	46	17	20	14	1.83
108739--108978	71	3.4	71	79	13	259	46	17	20	15	1.84
108969--109051	20	4.6	19	81	15	113	14	24	18	43	1.87
109158--109194	14	2.6	14	91	0	65	45	21	0	32	1.52
111154--111210	14	3.7	14	77	20	60	45	22	21	10	1.82
111135--111227	33	2.8	33	95	0	168	47	21	20	10	1.80
111098--111232	19	7.6	19	76	16	128	45	23	19	11	1.82
111228--111356	19	7.3	19	75	17	125	8	17	28	45	1.77
111228--111319	33	2.8	33	93	3	150	7	18	28	45	1.76
111400--111872	93	5.1	93	98	0	912	46	19	12	22	1.83
111400--111872	185	2.5	186	98	0	912	46	19	12	22	1.83
113579--113668	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113571--113685	33	3.5	33	95	0	212	45	20	24	9	1.81
113578--113690	19	6.8	18	72	23	88	43	22	24	9	1.83
113702--113756	14	3.6	14	73	21	56	9	27	23	40	1.85
113877--113947	33	2.2	33	92	0	115	47	18	22	11	1.80
114129--114183	22	2.5	22	81	0	74	20	16	40	23	1.91
114329--114521	20	9.6	20	82	5	219	19	19	25	35	1.95
114329--114521	60	3.2	60	83	0	251	19	19	25	35	1.95
114798--115070	136	2.0	136	100	0	546	31	6	30	30	1.83
115489--115537	24	2.0	24	96	0	89	28	6	8	57	1.52
116501--116549	22	2.1	22	81	7	53	57	2	2	38	1.22
117429--117480	26	1.9	27	88	7	79	1	21	5	71	1.17
117867--118083	3	71.7	3	87	1	317	61	1	1	35	1.15
118219--118301	40	2.0	43	86	6	118	19	22	7	50	1.72
118241--118754	113	4.5	113	94	0	839	27	20	14	38	1.90
119438--119946	52	9.8	52	97	0	943	39	22	15	22	1.91
120515--120560	19	2.6	18	90	10	69	54	6	6	32	1.52
120533--120569	16	2.3	16	90	0	56	54	5	8	32	1.53
120889--120942	1	54.0	1	77	0	54	0	11	0	88	0.50
120890--120945	5	11.4	5	83	14	64	0	12	0	87	0.54
120887--120940	11	5.1	11	82	8	76	0	12	0	87	0.56
120891--120942	20	2.7	20	96	3	97	0	11	0	88	0.52
132227--132275	22	2.1	22	81	7	53	57	2	2	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133153--133204	27	1.9	27	88	0	77	1	21	5	71	1.17
133591--133802	3	70.7	3	87	3	311	62	1	1	33	1.15
138706--138757	5	9.6	5	76	15	50	7	21	51	19	1.71
138682--138709	7	4.0	7	100	0	56	28	28	28	14	1.95
138692--138757	22	2.9	22	93	4	105	12	22	46	18	1.81
138699--138736	17	2.2	17	100	0	76	10	23	47	18	1.79
145964--146020	17	3.4	17	100	0	114	14	22	45	17	1.84
147420--147520	2	53.0	2	78	16	108	44	0	3	50	1.27
148422--148463	17	2.5	17	100	0	84	45	19	4	30	1.71
148568--148605	18	2.1	18	85	9	51	34	13	5	47	1.65
152546--152909	201	1.8	201	82	3	473	33	17	19	29	1.95
153559--153824	2	144.0	2	68	22	138	40	1	4	52	1.34
153558--153824	41	6.9	41	74	15	164	40	1	4	52	1.33
160729--160764	18	2.0	18	88	0	54	52	0	16	30	1.44
163923--163966	2	22.5	2	86	4	63	45	0	54	0	0.99
164102--164359	137	1.9	137	100	0	516	24	18	8	48	1.76
164417--164447	9	3.4	9	95	0	53	9	6	0	83	0.79
164642--165077	217	2.0	219	98	0	849	37	18	16	28	1.92
166419--166507	44	2.0	44	100	0	178	28	22	15	33	1.95
168379--168463	39	2.2	39	83	8	102	47	0	12	40	1.42
172802--172854	20	2.7	20	88	2	81	13	15	22	49	1.79
174490--174541	21	2.5	21	83	0	68	19	13	38	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174555--174604	21	2.4	21	80	6	57	22	10	36	32	1.87
174932--175044	42	2.7	42	87	0	154	21	34	19	24	1.96
174922--175024	21	4.9	21	78	4	109	20	33	20	25	1.97
176521--176559	20	2.0	20	89	0	60	46	25	15	12	1.81
177038--177073	18	2.0	18	94	0	63	16	8	25	50	1.73
181640--181673	12	2.8	12	90	0	50	14	0	29	55	1.40
182457--182520	20	3.2	20	76	8	76	32	12	21	32	1.91
182456--182546	40	2.3	40	80	3	112	34	12	19	34	1.89
182597--182635	20	2.0	20	94	0	69	25	15	15	43	1.86
182598--182647	20	2.5	20	86	0	64	24	16	18	42	1.89

Tables:   1   2   3   4   5   6   7