genome.fa.s4593.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004593.1 Hibiscus syriacus cultivar Beakdansim tig00010263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1592963

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 829 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1415952--1415994	21	2.0	21	90	0	68	27	25	20	25	1.99
1416032--1416072	21	2.0	21	100	0	82	14	29	39	17	1.89
1416099--1416177	21	4.0	21	76	18	89	12	27	39	20	1.89
1416121--1416150	15	2.0	15	100	0	60	13	26	33	26	1.93
1416100--1416171	36	2.0	36	91	0	117	13	27	37	20	1.91
1419124--1419189	34	2.0	32	88	5	96	22	28	16	31	1.96
1419408--1419447	21	1.9	22	90	10	66	12	10	40	37	1.77
1419475--1419517	21	2.0	21	90	0	68	27	25	20	25	1.99
1419553--1419595	21	2.0	21	100	0	86	13	27	44	13	1.83
1419645--1419674	15	2.0	15	100	0	60	13	26	33	26	1.93
1419621--1419701	21	4.0	21	74	21	75	12	27	40	19	1.87
1420033--1420309	21	12.6	21	67	15	96	24	23	21	31	1.98
1419993--1420399	111	3.7	111	95	0	733	25	23	20	31	1.98
1420255--1420464	42	4.9	42	72	13	153	22	21	21	33	1.97
1420372--1420468	21	4.8	19	74	12	86	22	19	22	35	1.96
1420372--1420467	40	2.3	42	91	3	160	21	19	22	35	1.96
1422525--1422574	2	25.0	2	100	0	100	50	0	0	50	1.00
1425273--1425325	27	2.0	27	92	0	88	28	16	18	35	1.93
1427710--1427833	31	4.0	29	78	11	122	40	4	8	46	1.54
1427711--1427841	62	2.1	63	83	10	164	41	3	7	46	1.50
1431725--1431776	25	2.0	26	92	3	88	32	26	9	30	1.89
1432862--1432899	14	2.5	15	83	12	51	65	2	0	31	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432860--1432898	13	2.8	13	81	11	51	64	2	0	33	1.08
1439977--1440004	2	14.0	2	100	0	56	50	0	50	0	1.00
1447094--1447430	173	2.0	172	97	2	642	34	16	15	33	1.91
1452902--1452949	3	16.0	3	82	8	53	64	0	2	33	1.05
1452911--1452961	24	2.1	23	85	10	66	58	1	3	35	1.28
1457163--1457282	59	2.0	60	98	1	233	41	8	8	41	1.65
1462483--1462562	35	2.3	34	79	10	90	43	6	2	47	1.41
1462499--1462591	32	2.8	36	84	9	117	45	6	3	45	1.45
1462542--1462603	32	1.9	33	83	9	83	48	6	1	43	1.38
1466259--1466340	37	2.2	37	82	10	105	47	0	2	50	1.14
1470094--1470468	189	2.0	187	98	1	725	35	23	17	23	1.96
1473673--1473778	50	2.1	50	92	3	178	34	12	13	39	1.82
1475474--1475519	24	2.0	23	82	4	56	54	2	2	41	1.25
1476623--1476662	17	2.3	18	82	4	55	67	2	2	27	1.16
1476965--1477012	24	2.0	23	84	4	60	31	2	4	62	1.26
1478947--1479050	15	6.5	15	76	17	102	45	0	2	51	1.16
1479044--1479091	22	2.4	18	73	23	51	33	0	14	52	1.42
1479100--1479571	32	16.7	31	71	24	333	34	0	12	52	1.43
1479105--1479431	54	5.9	54	80	8	379	34	0	12	52	1.45
1479158--1479517	86	4.2	87	87	9	542	33	0	12	53	1.41
1479030--1479683	224	3.0	218	84	10	848	34	0	12	52	1.42
1479159--1479480	170	1.9	166	94	2	572	33	0	12	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479388--1479441	14	3.6	14	72	18	54	37	0	5	57	1.22
1479442--1479485	22	2.0	22	90	0	70	34	0	13	52	1.41
1479415--1479588	54	3.2	54	95	1	305	34	0	12	53	1.38
1479497--1479539	22	2.0	22	100	0	86	34	0	13	51	1.42
1479325--1479683	54	6.6	54	76	15	221	35	0	11	52	1.40
1489220--1489249	14	2.1	14	93	0	51	13	10	20	56	1.65
1490493--1490750	7	35.3	7	70	21	140	40	2	5	51	1.38
1490551--1490767	5	42.6	5	67	21	80	39	2	3	54	1.33
1490564--1490605	17	2.5	17	80	7	50	35	2	7	54	1.41
1490535--1490714	59	3.2	57	81	14	164	40	2	4	52	1.34
1490639--1490750	53	2.0	53	79	16	113	41	1	3	52	1.29
1492654--1492696	2	21.5	2	95	0	77	48	0	2	48	1.14
1495654--1496390	245	3.0	245	97	1	1399	42	8	5	43	1.58
1496818--1496843	5	5.2	5	100	0	52	61	0	0	38	0.96
1498835--1498861	6	4.5	6	100	0	54	62	0	0	37	0.95
1501273--1501302	7	4.3	7	100	0	60	30	16	13	40	1.87
1510670--1510762	6	15.5	6	78	0	96	22	49	22	5	1.70
1510670--1510746	18	4.3	18	89	0	127	23	50	22	3	1.65
1510670--1510762	18	5.2	18	86	0	114	22	49	22	5	1.70
1514565--1514934	184	2.0	183	93	0	632	46	9	3	40	1.53
1514887--1514930	21	2.1	21	87	4	63	45	2	0	52	1.13
1520408--1520452	21	2.1	21	83	0	54	31	31	24	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1521573--1521669	32	3.1	32	77	14	119	28	16	18	36	1.93
1521572--1521672	31	3.2	31	80	13	125	28	17	18	34	1.94
1521660--1521753	30	3.1	30	90	3	136	20	21	27	30	1.98
1526355--1526451	32	3.1	32	75	14	110	28	15	18	37	1.92
1526442--1526535	30	3.1	30	90	3	136	20	21	27	30	1.98
1529664--1529703	19	2.1	19	100	0	80	52	20	10	17	1.72
1532131--1532169	10	3.9	10	82	0	51	2	25	23	48	1.63
1537059--1537133	20	3.7	20	75	12	64	36	25	18	20	1.95
1537059--1537174	21	5.6	21	70	10	69	34	25	18	22	1.96
1537180--1537356	40	4.4	39	85	5	212	36	24	19	20	1.95
1537203--1537352	20	7.4	20	80	1	183	37	24	19	19	1.94
1537162--1537355	60	3.2	60	80	6	214	37	24	19	19	1.94
1537911--1537989	20	3.9	21	83	5	85	51	16	18	12	1.75
1537911--1538032	20	6.5	19	73	13	83	49	20	18	11	1.78
1538028--1538140	20	6.1	19	74	13	92	13	22	20	44	1.86
1539106--1539141	14	2.6	14	95	0	63	33	0	22	44	1.53
1539303--1539502	33	5.8	33	81	9	231	12	22	20	45	1.83
1539369--1539435	19	3.5	19	80	8	64	13	20	23	41	1.88
1539301--1539509	105	2.0	106	89	2	323	12	22	20	44	1.85
1539475--1539548	20	3.7	20	66	10	51	22	18	22	35	1.96
1542035--1542086	24	2.2	24	82	0	59	36	21	19	23	1.95
1542927--1542988	20	3.0	20	76	2	70	20	19	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542998--1543042	21	2.1	21	87	0	63	37	17	26	17	1.93
1549876--1549907	2	16.5	2	93	6	57	50	0	0	50	1.00
1551609--1551674	29	2.2	30	83	2	80	36	3	3	57	1.29
1552753--1552779	2	13.5	2	100	0	54	48	0	0	51	1.00
1552941--1552984	21	2.1	21	95	0	79	25	6	4	63	1.38
1555070--1555143	23	3.2	23	76	0	76	48	14	13	22	1.79
1555100--1555179	23	3.5	23	80	0	88	41	16	16	26	1.89
1557745--1557789	7	6.1	7	82	10	54	2	24	0	73	0.95
1557722--1557780	23	2.7	22	82	10	59	6	22	0	71	1.09
1558898--1558923	2	13.0	2	100	0	52	50	0	0	50	1.00
1566181--1566215	17	2.1	17	88	0	52	37	20	8	34	1.83
1580203--1580316	32	3.6	31	82	4	131	27	28	26	17	1.98
1580226--1580316	31	2.9	32	85	3	130	27	27	27	17	1.98
1583570--1583703	64	2.1	64	82	10	159	35	20	17	27	1.94
1584326--1584380	23	2.4	22	81	6	65	21	23	23	30	1.99
1585709--1585752	21	2.1	21	86	0	61	31	27	25	15	1.96
1586428--1586581	31	5.0	31	95	1	265	20	19	22	37	1.94
1586834--1586876	2	21.5	2	100	0	86	48	0	0	51	1.00
1590390--1590434	21	2.1	21	87	0	63	31	28	24	15	1.96
1590460--1590504	22	2.0	22	82	4	54	31	31	26	11	1.91
1591100--1591253	31	5.0	31	96	1	274	19	19	22	38	1.94

Tables:   1   2   3   4   5   6   7

The End!