genome.fa.s4593.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004593.1 Hibiscus syriacus cultivar Beakdansim tig00010263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1592963

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 829 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184210--184243	2	17.0	2	100	0	68	50	0	0	50	1.00
186408--186494	37	2.3	40	80	9	110	68	1	9	20	1.23
186421--186455	17	2.1	17	88	0	52	71	0	8	20	1.11
186974--187066	37	2.5	37	89	0	132	31	11	13	43	1.81
187801--188851	106	9.9	106	95	0	1823	23	18	25	33	1.97
189447--189523	22	3.5	21	89	10	118	19	12	28	38	1.89
190150--190219	17	4.0	18	74	17	67	0	17	4	78	0.90
190150--190218	9	8.0	8	77	16	59	0	17	2	79	0.85
190150--190216	28	2.4	27	79	18	75	0	17	2	79	0.86
190150--190216	13	5.2	12	75	16	55	0	17	2	79	0.86
190141--190218	30	2.6	29	84	11	104	0	16	3	79	0.87
190529--190561	14	2.4	14	94	0	57	33	6	18	42	1.75
191379--191414	8	4.6	8	89	6	56	55	13	16	13	1.69
191379--191414	15	2.3	15	90	4	54	55	13	16	13	1.69
194914--194951	20	1.9	20	88	0	58	63	2	7	26	1.35
195002--195034	2	16.5	2	100	0	66	51	0	0	48	1.00
196274--196303	12	2.5	12	94	0	51	16	10	10	63	1.51
214478--214622	45	3.2	45	97	0	263	45	20	17	15	1.85
217674--217721	18	2.7	18	80	0	51	29	16	2	52	1.56
222568--222621	24	2.6	19	75	25	63	50	14	16	18	1.79
222574--222629	12	4.7	11	85	14	76	50	17	16	16	1.79
222574--222655	24	3.4	24	86	6	112	51	17	14	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222572--222629	7	9.7	6	73	26	52	50	17	15	17	1.79
222568--222633	19	3.2	19	74	25	55	50	15	16	18	1.79
222580--222649	36	1.9	36	82	5	88	52	17	14	15	1.74
222574--222666	24	3.9	24	85	5	107	49	17	13	19	1.79
229432--229684	123	2.0	124	98	0	490	18	16	9	54	1.68
230534--230561	2	14.0	2	100	0	56	50	0	0	50	1.00
231613--231665	2	26.5	2	100	0	106	50	0	0	49	1.00
233438--233928	136	3.6	135	91	1	777	24	22	18	34	1.96
234894--234941	13	3.6	13	83	5	60	4	10	0	85	0.73
234887--234946	14	4.5	14	78	21	67	6	15	0	78	0.95
252592--252631	21	1.9	21	100	0	80	30	25	30	15	1.95
252766--252799	10	3.4	10	95	0	59	8	11	26	52	1.67
252741--252792	24	2.2	24	86	6	70	9	15	28	46	1.77
252752--252823	34	2.1	34	89	0	108	11	12	23	52	1.71
252777--252836	24	2.5	24	88	0	93	15	11	16	56	1.67
252751--252780	14	2.1	14	100	0	60	6	16	30	46	1.73
252787--252836	14	3.9	14	72	20	54	16	12	14	58	1.64
253910--253950	16	2.6	16	96	0	73	7	12	19	60	1.54
263574--263782	43	4.9	42	84	6	197	23	15	25	34	1.95
263806--263889	44	1.9	44	85	0	114	29	17	20	32	1.96
264755--264954	41	4.9	41	94	1	305	30	20	16	33	1.94
265845--265916	36	2.0	36	86	8	101	15	11	34	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265865--265958	49	2.0	48	87	6	138	12	11	39	36	1.80
265830--265991	85	2.0	81	86	7	227	13	11	36	38	1.80
265915--265992	33	2.4	33	95	0	138	14	11	33	41	1.81
265912--266004	33	2.6	38	78	18	124	13	10	35	39	1.80
266546--266593	16	2.8	17	81	9	62	29	29	6	35	1.82
266657--266772	2	58.0	2	100	0	232	50	0	0	50	1.00
267508--267544	5	7.4	5	100	0	74	0	40	0	59	0.97
269257--269415	65	2.5	64	86	6	232	31	22	16	29	1.96
280139--280329	32	6.0	33	91	4	279	36	19	17	26	1.94
283653--283700	23	2.1	23	84	0	60	37	6	16	39	1.74
284321--284773	182	2.5	181	89	1	701	28	15	13	43	1.84
284647--285219	112	5.1	112	93	1	945	24	15	13	45	1.82
289482--289574	46	2.0	46	100	0	186	40	16	12	30	1.85
291423--291469	20	2.3	21	71	10	53	40	19	8	31	1.81
291531--291590	22	2.8	22	92	2	95	28	26	11	33	1.91
292385--292506	22	5.8	22	75	10	112	31	10	27	30	1.90
292428--292550	62	2.0	62	83	0	156	29	13	24	33	1.93
292448--292546	20	4.8	20	76	8	76	30	11	23	35	1.89
294710--294745	3	12.0	3	100	0	72	66	0	0	33	0.92
295989--296044	24	2.3	24	96	0	103	26	14	16	42	1.86
301563--301653	30	3.0	30	91	0	155	35	14	18	31	1.91
304916--304978	2	31.5	2	100	0	126	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309069--309190	18	6.8	18	75	12	108	42	13	10	33	1.78
309069--309166	35	2.8	35	90	1	151	42	15	9	32	1.78
310752--310797	22	2.1	22	88	8	67	36	17	4	41	1.69
316293--316324	15	2.1	15	94	0	55	34	9	21	34	1.86
316314--316358	23	2.0	23	81	0	54	42	8	13	35	1.75
319151--319329	21	8.9	21	66	16	83	44	29	0	26	1.55
319150--319366	49	4.3	49	76	13	199	43	30	0	25	1.55
319193--319366	7	24.9	7	75	11	70	43	30	0	25	1.55
319249--319366	56	2.1	56	88	3	175	44	31	0	24	1.54
319758--319798	14	3.1	14	76	20	52	41	0	4	53	1.22
321146--321180	18	1.9	18	88	0	52	17	37	31	14	1.89
325845--325904	17	3.5	17	82	6	77	63	3	1	31	1.20
325865--325904	8	4.7	9	81	12	57	65	0	0	35	0.93
325877--325924	17	2.8	17	84	6	53	62	6	0	31	1.20
333292--333827	272	2.0	275	91	1	871	26	20	20	31	1.98
334635--335101	156	3.0	156	95	0	835	25	14	18	41	1.88
339610--339681	34	2.2	31	79	13	74	52	1	2	43	1.24
350567--350641	23	3.1	25	77	11	75	65	0	5	29	1.15
350494--350631	15	8.9	16	69	23	66	65	2	3	28	1.24
351718--351757	2	20.0	2	100	0	80	50	0	0	50	1.00
351717--351779	12	5.7	11	83	10	58	47	0	6	46	1.28
352449--352526	32	2.4	32	93	0	129	16	28	32	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352586--352942	106	3.5	105	83	6	439	23	19	23	33	1.97
352750--352934	95	1.9	95	90	2	291	21	21	23	34	1.97
354024--354068	6	6.8	6	83	16	54	0	17	2	80	0.82
354024--354069	21	2.2	20	88	11	67	0	17	2	80	0.81
354024--354069	15	3.4	13	83	16	58	0	17	2	80	0.81
364674--364720	2	23.5	2	100	0	94	51	0	0	48	1.00
364747--364882	3	46.3	3	68	23	51	65	1	4	28	1.21
364743--364882	15	9.1	15	71	21	96	65	1	4	28	1.20
364835--364879	23	2.0	23	86	8	65	68	0	2	28	1.01
364743--364884	17	8.1	17	65	20	69	65	1	4	28	1.20
364776--364882	34	3.3	31	77	13	83	66	1	2	28	1.16
364808--364885	28	2.8	29	79	16	76	65	1	3	29	1.18
364915--364950	2	18.5	2	94	5	65	52	0	0	47	1.00
366871--366904	17	2.0	17	88	0	50	32	8	17	41	1.80
367304--367333	15	2.0	15	93	0	51	50	0	6	43	1.28
373112--373255	60	2.4	60	89	2	209	30	33	20	15	1.94
380063--380089	2	13.5	2	100	0	54	51	0	48	0	1.00
383217--383243	6	4.5	6	100	0	54	33	0	51	14	1.43
390841--390914	30	2.5	30	100	0	148	52	12	9	25	1.68
394872--394928	22	2.6	21	83	5	69	22	21	17	38	1.93
398135--398194	29	2.2	28	85	11	81	55	3	0	41	1.16
406157--406182	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408846--408878	17	1.9	17	93	0	57	66	0	0	33	0.92
408918--408957	21	1.9	21	89	0	62	50	2	0	47	1.14
408948--408982	17	2.1	16	94	5	61	40	8	0	51	1.33
414331--414383	22	2.4	21	78	9	61	54	3	0	41	1.18
424756--425299	111	4.9	111	78	5	487	32	22	16	28	1.95
424756--425197	222	2.0	224	83	4	554	33	22	16	28	1.95
436774--436811	2	18.5	2	94	5	67	50	0	2	47	1.15
437380--437468	5	16.6	5	70	21	56	74	2	6	16	1.14
437381--437444	27	2.3	27	81	7	76	75	3	6	15	1.14
437415--437457	16	2.5	17	88	7	61	76	0	11	11	1.02

Tables:   1   2   3   4   5   6   7