genome.fa.s4593.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004593.1 Hibiscus syriacus cultivar Beakdansim tig00010263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1592963

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 829 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711739--711771	16	1.9	18	88	11	52	30	0	0	69	0.88
712008--712050	17	2.6	17	96	3	79	60	0	0	39	0.97
712475--712543	28	2.5	27	79	4	75	43	8	11	36	1.72
712487--712543	28	2.0	28	86	0	78	40	8	14	36	1.76
712624--712693	31	2.3	31	87	4	99	44	11	8	35	1.71
714381--714415	17	2.0	18	88	5	54	42	22	11	22	1.85
724040--724074	16	2.1	17	89	5	54	40	2	14	42	1.60
725224--725253	14	2.1	14	93	0	51	40	6	10	43	1.64
729189--729248	30	2.0	30	83	6	77	38	3	5	53	1.39
734071--734131	29	2.2	27	82	11	70	50	6	6	36	1.54
744332--744406	10	7.6	10	79	5	73	82	2	0	14	0.77
744439--744517	26	3.1	24	69	27	56	68	2	3	25	1.19
744446--744529	24	3.2	26	73	20	75	66	2	3	27	1.20
744449--744522	26	2.8	26	74	20	73	67	2	4	25	1.21
744594--744658	15	4.8	13	78	16	62	78	0	3	18	0.88
744606--744639	17	2.0	17	88	0	50	88	0	2	8	0.62
744606--744654	24	2.0	24	88	0	71	83	0	2	14	0.73
744557--744656	5	20.4	5	71	17	52	74	0	4	22	0.99
744654--744697	2	22.5	2	90	4	72	50	2	0	47	1.13
745089--745169	37	2.2	37	81	0	90	34	11	13	40	1.80
745902--746346	104	4.3	104	90	5	656	21	18	27	32	1.97
746913--747389	65	7.1	65	72	15	280	38	12	19	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747077--747399	36	9.5	35	73	16	220	39	13	17	29	1.88
747089--747200	37	3.1	36	83	6	120	42	15	18	23	1.88
747113--747293	102	1.8	98	88	7	274	40	14	16	28	1.88
747077--747333	36	7.5	34	76	13	224	40	14	18	27	1.89
748925--748981	29	1.9	30	85	3	80	1	10	5	82	0.90
748926--748983	16	3.8	16	72	25	54	1	10	6	81	0.95
750155--750193	8	5.0	8	84	6	53	58	12	17	10	1.61
750155--750193	15	2.5	15	87	4	51	58	12	17	10	1.61
752847--752902	25	2.1	25	84	15	69	76	0	1	21	0.87
752868--752903	8	4.6	8	93	3	56	80	0	0	19	0.71
752863--752903	16	2.7	15	88	3	55	78	0	0	21	0.76
753089--753113	2	12.5	2	100	0	50	52	0	0	48	1.00
753153--753210	12	5.3	10	85	8	53	60	0	0	39	0.97
753172--753228	8	7.4	8	84	5	73	52	1	0	45	1.11
753172--753228	6	9.8	6	86	5	73	52	1	0	45	1.11
756004--756042	18	2.2	17	86	4	51	48	7	2	41	1.45
756114--756165	27	1.9	27	100	0	104	42	7	11	38	1.70
762198--762250	21	2.5	21	90	0	79	30	30	22	16	1.96
762262--762369	21	5.0	21	80	8	103	23	20	22	34	1.97
762246--762356	21	5.3	23	79	10	98	21	18	21	38	1.93
762246--762369	44	3.0	43	74	15	125	23	19	20	36	1.95
764749--764795	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767578--767695	60	2.0	60	84	3	157	33	14	2	49	1.57
769097--769146	21	2.4	21	96	3	93	36	20	28	16	1.93
770091--770210	35	3.3	36	89	5	181	44	19	5	31	1.72
770142--770202	21	3.2	21	65	29	64	42	21	4	31	1.74
770093--770237	35	4.1	36	83	11	142	42	18	6	33	1.75
774664--774770	35	2.9	36	88	5	153	45	17	3	32	1.66
774670--774798	35	3.6	36	82	9	124	43	17	5	34	1.72
776202--776239	2	19.5	2	89	5	60	47	0	0	52	1.00
777211--777240	2	15.0	2	100	0	60	0	50	0	50	1.00
785007--785119	22	5.1	22	84	2	93	30	13	22	33	1.92
785035--785126	22	4.2	22	84	0	112	26	17	22	33	1.96
786149--786278	57	2.2	59	83	14	171	34	10	16	37	1.84
786168--786292	60	2.1	57	79	7	144	32	14	16	36	1.89
787136--787187	23	2.3	23	87	9	72	50	1	1	46	1.23
787155--787215	31	1.9	33	83	12	83	44	1	1	52	1.20
816075--816100	9	2.9	9	100	0	52	19	0	0	80	0.71
823320--823351	16	1.9	17	93	6	57	56	0	0	43	0.99
823320--823352	17	1.9	17	93	0	57	57	0	0	42	0.98
834700--834870	91	1.9	91	86	2	245	43	20	12	23	1.86
836953--836992	21	1.9	21	90	10	64	30	35	10	25	1.88
837535--837574	21	1.9	21	90	10	64	30	35	10	25	1.88
846229--846310	32	2.6	32	82	0	101	20	13	31	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851954--851993	2	20.0	2	94	0	71	50	0	2	47	1.14
856560--856611	23	2.3	23	86	0	68	44	0	23	32	1.54
857300--857424	60	2.1	60	96	0	232	21	1	30	46	1.61
857892--857934	16	2.6	16	85	14	61	39	2	0	58	1.11
864384--864427	18	2.4	18	81	7	54	38	2	6	52	1.41
864513--864553	18	2.3	18	91	0	64	60	12	7	19	1.54
867684--867931	123	2.0	125	98	1	482	21	20	27	31	1.98
868663--868691	2	14.5	2	100	0	58	48	0	0	51	1.00
871598--871627	12	2.4	13	88	11	53	60	0	0	40	0.97
881593--881622	2	15.0	2	92	0	51	50	3	0	46	1.18
884993--885024	2	16.0	2	93	0	55	46	0	3	50	1.17
894875--894943	34	2.0	34	94	0	120	14	37	14	33	1.87
895355--895415	15	3.9	15	77	12	68	62	0	36	1	1.05
895343--895407	33	2.0	31	94	5	112	64	0	32	3	1.09
895636--895683	21	2.5	19	81	15	62	45	0	2	52	1.12
896640--896982	5	68.0	5	91	7	536	58	0	0	41	0.98
898248--898614	121	3.0	121	83	6	499	46	4	11	38	1.59
898626--898676	26	2.0	26	88	0	75	56	3	1	37	1.29
898759--899100	112	3.0	113	73	12	314	47	2	9	39	1.51
898798--899117	113	2.8	111	86	7	425	48	2	11	37	1.54
899238--899279	21	2.0	21	100	0	84	61	4	0	33	1.17
911465--911520	10	5.5	10	77	10	51	23	25	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914022--914125	48	2.2	48	84	10	133	20	13	16	50	1.78
914036--914130	24	4.0	24	81	8	104	22	10	16	50	1.75
914039--914132	48	2.0	48	87	8	138	22	10	15	51	1.74
918189--918362	73	2.4	72	80	5	188	26	10	10	52	1.68
920158--920190	11	3.1	11	91	8	59	0	0	9	90	0.44
920161--920189	10	2.9	10	100	0	58	0	0	6	93	0.36
920158--920200	21	2.1	21	86	4	61	4	0	9	86	0.71
922190--922719	266	2.0	264	96	2	985	29	18	10	41	1.84
923481--923530	17	2.9	16	80	19	57	22	6	2	70	1.20
925328--925382	21	2.6	21	76	0	65	67	3	1	27	1.17
925378--925418	2	20.5	2	100	0	82	51	0	0	48	1.00
928445--928474	2	15.0	2	100	0	60	50	0	0	50	1.00
929695--929744	12	4.3	12	72	10	50	44	2	2	52	1.24
929709--930118	22	18.6	22	87	4	506	41	0	9	48	1.38
929709--930118	66	6.2	66	87	3	565	41	0	9	48	1.38
932290--932359	37	1.9	36	85	8	97	48	4	0	47	1.21
933509--933575	2	36.5	2	78	16	56	43	0	0	56	0.99
933568--933618	25	2.0	25	88	11	77	15	11	33	39	1.84
936625--936782	21	7.8	20	72	7	86	38	25	17	18	1.92
936749--936998	20	12.5	20	81	6	229	37	24	17	20	1.93
937676--937722	24	2.0	24	87	8	69	25	14	21	38	1.92
940234--940331	19	5.4	19	82	13	125	15	21	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940215--940331	53	2.2	52	95	1	207	14	23	18	43	1.87
940408--940462	14	3.6	14	73	21	56	45	20	23	10	1.82
940390--940550	33	4.7	33	88	9	243	44	18	22	14	1.85
940390--940556	70	2.4	68	88	8	241	43	17	23	14	1.87
940527--940641	52	2.2	52	83	4	142	20	22	17	40	1.92
940562--940661	19	5.5	19	82	12	138	15	22	17	46	1.84
940546--940661	52	2.2	52	93	3	198	14	23	17	44	1.85
940766--940802	14	2.6	14	91	0	65	45	21	0	32	1.52
942705--942794	14	5.7	14	74	23	81	42	23	25	8	1.83
942697--942811	33	3.5	33	95	0	212	45	20	24	9	1.81

Tables:   1   2   3   4   5   6   7