genome.fa.s4846.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004846.1 Hibiscus syriacus cultivar Beakdansim tig00010927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1467214

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 661 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633049--633102	22	2.5	22	82	8	67	68	1	1	27	1.10
633451--633676	84	2.7	83	82	3	260	23	19	24	32	1.98
633845--634329	240	2.0	246	83	4	622	27	17	22	33	1.96
634290--634372	43	1.9	43	90	0	130	20	18	31	30	1.96
634406--634545	55	2.5	55	75	11	131	29	15	20	35	1.93
636168--636206	20	2.1	19	85	9	53	43	0	0	56	0.99
637386--637438	21	2.5	21	81	6	72	20	26	18	33	1.96
637428--637479	21	2.5	21	87	3	70	38	17	23	21	1.93
637413--637583	41	4.2	41	69	8	132	29	21	18	30	1.97
637489--637561	21	3.5	21	79	3	76	23	21	17	36	1.94
637551--637662	20	5.6	20	79	4	118	38	18	20	22	1.93
637553--637644	41	2.3	41	82	1	114	41	16	21	20	1.90
637872--637924	27	1.9	27	84	3	70	39	32	7	20	1.81
638237--638295	20	3.0	20	84	0	73	13	22	18	45	1.84
640429--640495	21	3.2	21	66	6	55	23	35	20	19	1.95
640377--640495	42	2.8	42	76	12	102	23	36	17	22	1.95
641852--641887	14	2.6	14	95	0	63	30	0	25	44	1.54
641994--642125	33	4.0	32	80	6	149	45	18	20	15	1.85
641994--642058	19	3.7	19	70	19	68	44	18	23	13	1.85
641997--642124	66	1.9	66	92	3	213	45	18	21	14	1.85
642090--642135	19	2.4	19	96	0	83	45	26	15	13	1.82
642130--642294	33	5.1	31	87	7	222	15	23	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644586--644622	12	3.1	12	100	0	74	0	27	0	72	0.84
645635--645686	21	2.5	21	87	3	70	38	17	23	21	1.93
645671--645762	20	4.6	20	73	2	76	39	21	18	20	1.93
645976--646063	20	4.4	20	68	5	79	42	21	19	17	1.90
646090--646157	19	3.8	19	83	12	92	13	20	17	48	1.80
647684--647775	20	4.6	20	73	2	76	39	21	18	20	1.93
647989--648076	20	4.4	20	68	5	79	42	21	19	17	1.90
648103--648170	19	3.8	19	83	12	92	13	20	17	48	1.80
649696--649787	20	4.6	20	73	2	76	39	21	18	20	1.93
650001--650096	20	4.8	20	80	10	115	38	21	22	16	1.93
650115--650182	19	3.8	19	81	12	83	14	20	16	48	1.81
651710--651801	20	4.6	20	73	2	76	39	21	18	20	1.93
652015--652102	20	4.4	20	80	11	117	37	23	22	15	1.93
652129--652196	19	3.8	19	81	12	83	14	20	16	48	1.81
653724--653815	20	4.6	20	73	2	76	39	21	18	20	1.93
654028--654115	20	4.4	20	80	11	117	37	23	22	15	1.93
654142--654209	19	3.8	19	81	12	83	14	20	16	48	1.81
655717--655770	21	2.6	21	100	0	108	42	16	18	22	1.89
655757--655848	20	4.6	20	73	2	76	39	21	18	20	1.93
656062--656129	20	3.4	20	68	8	66	41	23	19	16	1.90
656175--656223	19	2.6	19	96	0	89	14	18	16	51	1.77
657732--657800	20	3.4	20	76	11	68	36	21	18	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657760--657809	20	2.5	20	80	0	73	38	22	18	22	1.94
658136--658184	19	2.6	19	96	0	89	14	18	16	51	1.77
659724--659792	20	3.4	20	76	11	68	36	21	18	23	1.95
659752--659801	20	2.5	20	80	0	73	38	22	18	22	1.94
660015--660102	20	4.4	20	74	5	88	40	22	19	17	1.91
660015--660110	40	2.4	41	75	8	99	42	20	18	17	1.89
660129--660194	19	3.7	19	82	13	88	13	19	18	48	1.81
660332--660369	14	2.7	14	87	0	58	47	15	0	36	1.46
661570--661704	19	7.3	19	72	16	104	11	20	24	43	1.85
661570--661665	33	2.7	36	88	7	135	10	18	23	46	1.80
661638--661704	20	3.4	20	80	10	75	14	22	23	38	1.92
661675--661730	20	2.8	20	88	0	76	23	16	28	32	1.96
662015--662058	20	2.2	20	84	4	54	20	25	18	36	1.95
662586--662633	18	2.7	18	93	0	87	14	12	45	27	1.81
663950--664008	20	3.0	20	87	0	73	44	22	18	15	1.87
664264--664313	22	2.4	21	81	15	59	22	12	42	24	1.87
664272--664315	22	2.0	22	91	8	72	18	13	45	22	1.84
664508--664574	20	3.3	20	87	0	98	28	13	29	28	1.94
664482--664619	41	3.4	41	76	6	154	23	15	24	35	1.94
664542--664637	41	2.3	41	83	3	113	20	19	25	34	1.96
664606--664656	20	2.5	21	83	3	68	17	23	19	39	1.92
664646--664698	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665092--665145	22	2.3	24	81	12	60	42	1	0	55	1.10
680655--680699	23	1.9	24	81	4	56	24	20	22	33	1.97
681985--682060	23	3.4	23	85	5	111	36	26	19	17	1.94
681985--682164	21	8.4	21	75	6	121	38	22	16	22	1.93
682548--682580	17	1.9	18	88	11	52	42	12	3	42	1.57
685886--685929	23	1.9	23	90	0	70	31	25	22	20	1.98
688986--689623	84	7.6	84	76	6	510	31	23	19	25	1.98
689242--689613	165	2.2	167	81	5	403	32	22	20	24	1.98
688986--689619	249	2.5	249	86	1	847	32	23	19	25	1.98
690062--690103	11	4.1	10	81	9	50	23	2	0	73	0.94
692238--692282	23	1.9	24	86	4	65	48	4	2	44	1.35
696626--696684	23	2.6	23	83	0	82	28	22	27	22	1.99
704256--704281	3	8.7	3	100	0	52	65	0	0	34	0.93
704472--704936	129	3.5	131	78	3	425	26	15	31	27	1.96
704955--705061	29	3.6	30	89	3	146	40	15	19	24	1.91
705142--705358	63	3.4	62	85	3	256	43	15	12	28	1.83
705444--705541	33	3.0	33	93	0	169	26	21	17	34	1.95
706572--706646	15	5.4	14	85	10	93	0	14	8	77	0.98
706572--706634	29	2.1	30	91	2	101	0	14	7	77	0.97
706603--706646	12	3.4	12	90	9	61	0	13	6	79	0.92
706572--706646	27	2.7	26	85	8	87	0	14	8	77	0.98
711793--711838	24	1.9	24	86	0	65	52	21	8	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713219--713277	28	2.1	28	96	0	109	59	0	3	37	1.14
714407--714445	11	3.2	12	83	16	53	56	2	0	41	1.13
715890--715939	3	17.0	3	84	12	68	62	0	0	38	0.96
716130--716359	42	5.4	40	66	24	125	18	23	15	42	1.88
716090--716366	86	3.2	85	91	0	446	18	24	16	40	1.90
749347--749406	30	2.0	30	87	9	86	53	0	1	45	1.10
756082--756109	12	2.3	12	100	0	56	17	7	25	50	1.72
762170--762209	21	2.0	19	85	9	53	27	12	27	32	1.93
777845--778078	60	3.9	60	84	4	303	38	20	16	23	1.92
777845--778071	120	1.9	120	88	5	343	38	21	15	23	1.92
785346--785399	17	3.1	16	79	12	54	68	1	1	27	1.10
786738--786804	24	2.9	23	82	13	84	52	0	1	46	1.09
787094--787506	45	9.1	45	87	10	533	34	19	22	23	1.96
787117--787186	35	2.0	35	100	0	140	34	22	28	14	1.93
787094--787322	80	2.7	81	85	10	316	35	20	24	19	1.96
787182--787255	25	3.2	25	62	18	68	37	18	22	20	1.94
787152--787506	145	2.5	146	89	6	466	34	19	21	24	1.96
789477--789622	78	1.9	78	92	0	247	21	18	22	36	1.95
793118--793162	15	3.0	15	93	0	81	22	26	13	37	1.91
794634--794660	12	2.2	12	100	0	54	62	7	7	22	1.46
794607--794691	40	2.1	41	82	6	102	56	9	11	22	1.63
794652--794684	8	4.2	8	88	7	50	63	9	12	15	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794864--794950	43	2.0	44	88	6	133	34	25	10	29	1.89
798660--798733	3	24.3	3	75	2	67	56	0	2	40	1.13
798654--798737	40	2.1	41	83	14	106	54	0	2	42	1.13
798680--798733	24	2.2	25	86	3	74	57	0	3	38	1.17
806554--806625	17	4.2	17	83	5	83	37	13	8	40	1.75
807846--807917	17	4.2	17	83	3	90	41	8	12	37	1.73
812322--812372	12	4.1	12	74	18	50	13	9	9	66	1.44
818216--818276	17	3.6	17	78	10	72	37	14	4	42	1.68
823301--823360	22	2.7	23	75	19	63	68	5	1	25	1.19
824458--824490	18	1.9	17	88	11	50	33	6	48	12	1.65

Tables:   1   2   3   4   5   6