Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004846.1 Hibiscus syriacus cultivar Beakdansim tig00010927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1467214

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 661 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1125509--1125533
10
2.5
10
100
0
50
32
0
8
60
1.26
1126086--1126503
55
7.6
55
90
2
619
34
17
11
36
1.85
1126842--1126893
22
2.5
20
79
11
59
30
26
13
28
1.94
1126936--1127005
20
3.5
20
84
5
97
21
31
12
34
1.91
1133117--1133561
55
8.1
55
93
3
729
33
19
11
35
1.88
1134787--1134860
39
1.9
38
81
13
89
45
9
4
40
1.55
1134838--1134931
36
2.6
36
73
6
91
44
8
3
43
1.50
1134856--1134943
36
2.4
36
83
3
97
44
7
5
42
1.57
1134927--1134956
12
2.5
12
94
0
51
50
6
10
33
1.62
1134931--1135153
35
6.3
35
75
11
188
40
11
4
43
1.62
1150508--1150543
16
2.2
17
90
5
56
47
0
2
50
1.15
1151669--1151725
24
2.4
24
90
0
87
15
8
43
31
1.78
1152407--1152450
20
2.2
20
84
8
54
47
4
0
47
1.22
1158720--1158757
16
2.4
16
82
4
51
63
0
5
31
1.17
1158930--1158984
27
2.1
25
80
12
58
58
1
1
38
1.20
1159015--1159043
2
14.5
2
100
0
58
51
0
0
48
1.00
1159430--1159521
36
2.5
37
82
7
107
29
15
14
41
1.86
1159430--1159530
37
2.8
37
84
6
125
29
15
14
39
1.88
1203399--1203450
24
2.1
24
85
3
68
38
0
11
50
1.39
1211204--1211252
21
2.3
21
83
16
66
14
2
6
77
1.05
1225865--1225928
32
2.0
32
100
0
128
21
25
6
46
1.74
1232721--1232762
22
1.9
22
90
0
66
28
21
19
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1236125--1236176
24
2.1
24
85
3
68
38
0
11
50
1.39
1242864--1242930
27
2.5
27
81
13
77
34
1
4
59
1.26
1256871--1256909
19
2.2
17
90
9
60
33
0
0
66
0.92
1256876--1256909
17
2.1
17
88
5
52
32
0
0
67
0.91
1269191--1269328
35
3.9
35
92
0
231
44
17
18
19
1.86
1269494--1269547
19
2.9
18
81
10
56
35
0
0
64
0.94
1291672--1291707
2
18.0
2
100
0
72
50
0
0
50
1.00
1291792--1291865
16
4.7
15
75
14
60
35
2
1
60
1.19
1291897--1291969
33
2.2
33
80
9
87
20
2
5
71
1.19
1301877--1302016
26
5.3
27
71
15
96
22
5
2
70
1.18
1301918--1301950
16
2.1
16
94
0
57
12
9
0
78
0.95
1301917--1301983
30
2.2
30
81
7
82
16
7
2
73
1.19
1302070--1302132
29
2.2
29
82
0
72
19
12
1
66
1.32
1303504--1303551
22
2.2
23
85
7
64
37
2
22
37
1.66
1303916--1303962
15
3.1
16
77
22
57
29
0
0
70
0.88
1303911--1303953
21
2.1
20
82
4
50
32
0
0
67
0.91
1317714--1317765
24
2.1
24
85
3
68
38
0
11
50
1.39
1325179--1325245
31
2.1
32
91
2
109
14
16
50
17
1.78
1325905--1325957
16
3.2
16
86
5
70
13
1
3
81
0.92
1328599--1328634
16
2.2
17
90
5
56
66
5
22
5
1.34
1333666--1333700
8
4.2
8
85
7
52
25
0
0
74
0.82
1333662--1333697
16
2.2
17
95
5
65
30
0
0
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1340018--1340083
27
2.5
27
81
18
77
33
3
4
59
1.33
1361028--1361069
22
1.9
22
90
0
66
28
26
19
26
1.98
1364035--1364085
23
2.1
23
85
7
66
39
0
11
49
1.40
1371692--1371746
22
2.4
22
87
6
74
10
1
7
80
0.99
1371698--1371748
11
4.5
11
85
5
57
11
1
5
80
0.97
1379455--1379493
19
2.2
17
90
9
60
33
0
0
66
0.92
1379460--1379493
17
2.1
17
88
5
52
32
0
0
67
0.91
1391787--1391924
35
3.9
35
87
0
204
45
15
18
20
1.85
1392102--1392145
19
2.4
18
85
7
54
34
0
0
65
0.93
1393381--1393429
2
24.0
2
91
4
80
46
2
2
48
1.25
1393587--1393652
23
2.9
23
75
2
62
43
0
4
51
1.22
1421409--1421588
88
2.0
88
98
0
351
29
10
28
31
1.89
1431908--1431959
24
2.1
24
85
3
68
38
0
11
50
1.39
1447613--1447648
16
2.2
17
90
5
56
66
5
22
5
1.34
1452629--1452667
19
2.2
17
90
9
60
33
0
0
66
0.92
1452634--1452667
17
2.1
17
88
5
52
32
0
0
67
0.91
1464848--1464981
35
3.8
35
84
0
196
45
15
17
20
1.85

Tables:   1   2   3   4   5   6

The End!