genome.fa.s4920.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004920.1 Hibiscus syriacus cultivar Beakdansim tig00011079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590857

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 832 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405332--405439	39	2.8	38	77	12	112	45	6	5	42	1.53
405153--405497	149	2.4	141	78	8	329	42	8	4	44	1.53
406426--407546	106	10.6	106	95	0	1870	23	18	24	33	1.96
411544--411569	9	2.9	9	100	0	52	92	0	0	7	0.39
412694--412761	33	2.1	31	84	10	84	44	5	5	44	1.52
412807--412890	35	2.3	36	84	12	100	42	5	5	45	1.53
412645--412990	150	2.4	141	78	9	324	42	8	4	45	1.53
415150--415236	3	29.0	3	90	9	142	34	0	0	65	0.93
416768--416822	23	2.3	26	81	12	73	41	3	0	54	1.18
417321--417362	22	2.0	21	85	4	57	28	2	2	66	1.16
420678--420709	15	2.1	15	94	0	55	28	18	6	46	1.73
428009--428045	8	4.6	8	87	12	58	89	0	10	0	0.49
428008--428039	9	3.7	9	91	8	57	90	0	9	0	0.45
428008--428045	16	2.3	16	95	4	67	89	0	10	0	0.49
429032--429322	94	3.1	94	88	5	464	30	15	20	33	1.94
429210--429425	115	1.9	115	92	2	355	35	14	20	29	1.92
430113--431012	113	8.0	112	92	2	1252	38	15	19	27	1.91
430838--430882	24	1.9	23	82	13	56	48	6	26	17	1.72
431227--431290	3	21.0	3	84	9	85	39	0	0	60	0.97
432804--432853	23	2.0	26	85	11	70	46	2	0	52	1.12
435065--435133	23	3.0	23	95	0	120	27	26	27	18	1.98
435723--435878	64	2.4	64	78	5	163	26	19	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450648--450707	31	1.9	31	89	0	93	40	11	25	23	1.88
455952--456049	50	2.0	50	89	0	151	40	22	5	31	1.76
459119--459224	45	2.3	47	83	6	126	31	11	18	38	1.86
468920--468961	19	2.3	18	83	4	57	73	0	21	4	1.01
468948--468984	7	4.9	8	80	12	51	78	0	10	10	0.97
468949--468995	15	3.2	15	87	3	69	78	0	10	10	0.96
470349--470703	51	6.9	51	92	1	532	29	16	27	26	1.97
470344--470827	51	9.3	52	88	6	529	29	16	26	28	1.97
470577--470837	55	4.8	55	87	3	300	30	16	23	29	1.96
478558--478608	20	2.5	20	80	0	57	41	7	0	50	1.31
479272--479312	12	3.6	12	77	12	50	48	19	14	17	1.81
480008--480163	31	5.0	31	75	16	144	38	21	17	23	1.93
480008--480163	62	2.5	62	88	2	224	38	21	17	23	1.93
483625--483657	4	8.2	4	100	0	66	24	0	24	51	1.48
485449--485512	23	2.8	23	82	0	74	34	23	23	18	1.96
486422--486571	65	2.3	67	92	3	250	30	28	25	16	1.96
487050--487353	149	2.0	149	96	0	563	28	16	19	36	1.93
493432--493474	21	2.0	21	81	0	50	30	30	25	13	1.94
493454--493602	66	2.3	65	91	4	237	30	28	24	16	1.96
494081--494384	149	2.0	149	96	0	563	27	16	19	35	1.93
496531--496592	21	3.0	21	95	0	115	22	22	24	30	1.99
503195--503248	23	2.4	23	78	9	58	35	11	14	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510984--511036	23	2.3	23	86	0	79	24	26	28	20	1.99
511055--511269	103	2.1	103	96	0	394	38	25	12	24	1.90
519981--520080	50	2.0	50	94	3	175	28	8	30	34	1.86
535413--535730	155	2.0	157	92	1	532	25	14	19	39	1.90
542924--543191	133	2.0	133	93	1	457	27	16	15	41	1.88
550996--551025	9	3.4	9	90	9	53	0	0	26	73	0.84
558568--558671	55	1.9	55	95	0	190	31	15	20	32	1.93
569773--569811	11	3.5	11	100	0	78	33	0	20	46	1.51
592690--592766	40	1.9	40	84	5	102	27	22	12	37	1.91
592690--592797	20	5.5	20	70	16	57	27	21	13	37	1.91
592661--592773	40	2.8	39	72	5	100	29	20	12	38	1.89
593724--593770	24	2.0	24	91	0	76	21	19	21	38	1.94
594344--594370	2	13.5	2	100	0	54	51	0	0	48	1.00
595827--595860	17	1.9	18	88	5	52	35	14	8	41	1.77
595996--596068	36	2.0	36	100	0	146	28	19	8	43	1.79
596743--596790	9	5.0	9	80	9	51	37	33	18	10	1.85
600673--600750	36	2.2	36	92	0	129	29	20	6	43	1.76
601558--601603	21	2.2	21	84	0	56	28	30	28	13	1.94
601627--601668	22	2.0	22	85	4	59	28	35	28	7	1.84
601974--602012	18	2.1	19	85	4	53	28	2	15	53	1.55
602586--602677	31	3.0	31	88	3	132	20	18	22	38	1.94
605808--605853	21	2.2	21	84	0	56	30	30	26	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605877--605925	22	2.2	22	82	7	64	32	30	28	8	1.86
606833--606955	31	4.0	31	94	2	194	21	19	21	37	1.94
609793--609833	11	3.8	10	87	9	55	41	0	2	56	1.13
609829--609920	3	30.7	3	91	0	148	63	1	2	33	1.14
610246--611025	114	6.8	114	95	0	1181	29	19	12	37	1.89
611764--612218	83	5.5	83	98	0	829	37	22	12	26	1.91
613373--613412	9	4.4	9	84	9	55	2	10	0	87	0.63
613372--613415	17	2.6	17	92	7	72	2	13	0	84	0.73
626194--626234	11	3.8	10	87	9	55	41	0	2	56	1.13
626230--626315	3	28.7	3	90	0	136	62	1	2	33	1.15
627608--627640	3	11.0	3	93	0	57	69	0	30	0	0.88
629702--629742	12	3.4	12	86	0	55	56	24	2	17	1.53
629701--629735	6	5.8	6	86	0	52	60	20	2	17	1.49
629920--629967	20	2.4	20	75	0	60	31	14	25	29	1.95
630102--630209	37	2.9	36	71	8	99	55	14	2	26	1.53
630156--630190	14	2.5	14	100	0	70	48	20	0	31	1.50
630091--630265	77	2.3	78	93	1	298	50	17	1	30	1.56
630232--630265	14	2.4	14	100	0	68	47	20	0	32	1.51
631208--631247	2	20.5	2	94	5	73	50	0	0	50	1.00
631657--631756	21	4.8	21	75	14	98	26	18	34	22	1.96
631644--631756	42	2.7	41	86	5	154	24	16	37	21	1.94
632060--632175	21	5.5	21	68	8	56	31	33	12	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633820--633860	20	2.0	20	90	0	64	12	14	19	53	1.72
634203--634254	22	2.4	22	83	0	68	15	19	44	21	1.87
634421--634507	20	4.3	20	88	0	129	24	18	21	35	1.95
634422--634510	40	2.2	40	89	0	142	24	17	20	37	1.94
634422--634527	40	2.7	40	85	2	106	25	16	22	34	1.95
653130--653171	21	2.0	22	85	4	59	19	11	9	59	1.59
660233--660337	34	3.1	33	80	13	115	23	6	24	44	1.77
668941--669010	34	2.1	34	94	0	122	40	8	11	40	1.72
673642--673701	21	3.0	21	73	7	63	48	0	0	51	1.00
673674--673777	38	2.8	37	84	15	137	41	1	1	54	1.22
673983--674010	2	14.0	2	100	0	56	50	0	0	50	1.00
676354--676392	21	1.9	21	94	5	71	35	7	7	48	1.61
676617--676695	21	3.7	21	79	17	76	22	34	20	22	1.97
677914--678061	49	3.1	48	88	5	183	22	14	25	37	1.92
677914--678150	48	4.9	49	82	2	248	21	15	27	35	1.94
678295--678376	30	2.7	30	86	3	112	45	8	19	26	1.79
678372--678400	5	6.0	5	96	4	51	41	0	20	37	1.53
685634--685674	21	2.0	21	85	9	57	46	19	9	24	1.80
693328--693367	13	3.1	13	85	0	53	35	25	12	27	1.92
693423--693464	22	1.9	22	90	0	66	23	14	16	45	1.84
694927--694963	20	1.9	19	89	10	58	16	21	10	51	1.74
707650--707684	16	2.1	17	89	5	54	82	0	2	14	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710086--710249	21	7.7	21	77	2	139	24	12	24	38	1.90
713945--714016	35	2.1	35	100	0	144	51	11	11	26	1.71
725862--725983	2	61.5	2	88	1	183	50	4	0	44	1.23
732194--732409	83	2.6	83	89	2	326	24	20	13	41	1.88
735324--735437	21	5.4	21	91	0	174	31	24	19	24	1.98
735446--735610	21	7.8	21	75	14	99	23	22	21	32	1.98
735541--735610	19	3.6	19	86	3	95	21	21	22	34	1.97
736280--736433	21	7.4	21	77	12	149	37	21	19	21	1.94
736280--736473	42	4.7	42	82	8	229	36	23	19	21	1.95
736425--736479	21	2.6	21	94	0	92	30	29	21	18	1.97

Tables:   1   2   3   4   5   6   7