genome.fa.s4920.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004920.1 Hibiscus syriacus cultivar Beakdansim tig00011079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590857

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 832 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155714--155786	30	2.5	30	97	2	139	31	20	6	41	1.79
155714--155786	15	4.9	15	83	3	103	31	20	6	41	1.79
157666--157733	34	2.0	34	100	0	136	35	2	20	41	1.68
165963--166012	25	1.9	27	84	8	68	34	2	6	58	1.34
167995--168044	25	1.9	27	84	8	68	34	2	6	58	1.34
170005--170071	2	33.5	2	93	0	116	47	1	0	50	1.10
178955--178991	6	6.2	6	87	0	56	35	48	13	2	1.57
178989--179017	5	5.8	5	100	0	58	20	37	41	0	1.53
183033--183067	6	5.8	6	100	0	70	34	48	17	0	1.47
183065--183188	5	24.8	5	99	0	167	27	32	40	0	1.57
188642--188675	17	2.0	17	100	0	68	52	0	11	35	1.38
202031--202304	97	2.7	101	81	7	351	45	17	21	14	1.84
203611--203697	28	3.1	28	76	20	83	35	1	11	51	1.46
203708--203734	14	1.9	14	100	0	54	59	0	7	33	1.25
204517--204572	27	2.1	26	83	9	69	60	0	0	39	0.97
211957--212043	44	2.0	45	95	2	158	34	14	12	37	1.85
214677--214737	29	2.1	29	84	9	79	29	18	13	39	1.88
215062--215102	18	2.3	18	87	4	57	29	7	2	60	1.36
217300--217371	26	3.0	24	68	27	62	26	6	4	62	1.39
222444--222483	15	2.7	15	100	0	80	42	40	5	12	1.64
224187--224546	131	2.8	130	83	1	443	31	11	16	40	1.84
225462--225517	24	2.2	26	75	6	62	48	10	16	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228537--228582	23	2.0	23	86	0	65	76	0	23	0	0.79
228550--228575	13	2.0	13	100	0	52	84	0	15	0	0.62
230099--230135	17	2.1	18	90	5	58	64	13	5	16	1.45
231775--232086	53	5.9	53	87	2	412	23	26	20	30	1.98
232458--232788	42	8.1	42	66	17	162	31	21	17	29	1.96
232453--232882	122	3.4	122	87	5	560	30	21	18	29	1.96
232753--232981	93	2.5	93	88	0	341	29	21	17	31	1.96
241499--241535	17	2.1	18	90	5	58	64	13	5	16	1.45
243525--243549	2	12.5	2	100	0	50	48	0	0	52	1.00
243549--243583	2	17.5	2	93	0	61	2	0	48	48	1.16
245528--245687	21	7.8	20	73	12	119	21	18	24	35	1.96
245522--245683	42	3.9	41	88	8	222	20	19	24	35	1.95
246414--246578	19	8.0	21	72	17	125	35	23	20	20	1.96
246414--246619	21	9.9	20	74	13	177	34	24	19	21	1.96
246411--246600	42	4.6	42	94	1	330	34	24	20	20	1.96
250355--250403	21	2.3	21	89	6	73	65	4	8	22	1.37
250667--250713	20	2.3	20	100	0	94	51	8	19	21	1.73
251405--251460	23	2.4	23	87	0	76	48	12	10	28	1.74
252397--252434	16	2.3	16	95	4	67	26	7	28	36	1.84
269033--269177	59	2.4	59	85	5	204	31	18	17	31	1.95
269885--269910	2	13.0	2	100	0	52	50	0	0	50	1.00
271754--271784	6	5.3	6	96	3	55	19	19	16	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280344--280410	31	2.2	31	94	0	116	26	22	13	37	1.91
292695--292782	3	28.7	3	80	8	97	37	2	0	60	1.10
292707--292776	19	3.8	19	79	5	81	38	2	0	58	1.13
294038--294078	20	2.0	21	85	4	57	36	2	2	58	1.24
294769--294820	7	6.9	7	79	16	59	26	0	0	73	0.84
294767--294822	16	3.2	16	79	20	60	25	0	0	75	0.81
294773--294825	13	4.1	14	85	9	69	26	0	0	73	0.83
294765--294825	20	3.2	20	76	21	67	26	0	0	73	0.83
294765--294820	23	2.5	23	80	13	80	26	0	0	73	0.84
299017--299151	72	1.9	72	93	0	234	25	20	20	34	1.97
303581--303660	40	2.0	40	92	0	133	33	16	20	30	1.94
304050--304104	22	2.5	22	82	5	67	32	12	16	38	1.86
304508--306135	113	14.5	113	94	1	2461	37	13	19	29	1.90
306044--306208	73	2.3	73	91	2	260	34	13	17	34	1.89
306501--306597	3	31.7	3	80	8	106	38	2	0	59	1.09
307879--307919	20	2.0	21	85	4	57	36	2	2	58	1.24
310814--310858	22	2.0	22	91	0	72	44	28	2	24	1.66
311349--311393	20	2.2	20	88	7	65	40	0	20	40	1.52
321304--321360	24	2.4	24	90	0	87	40	5	42	12	1.65
322046--322075	3	10.0	3	92	0	51	33	3	0	63	1.11
334548--334584	14	2.6	14	100	0	74	29	21	13	35	1.92
340985--341118	51	2.6	52	92	1	225	41	19	19	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343120--343201	42	2.0	42	87	0	119	24	18	20	36	1.95
342665--343469	249	3.2	249	88	2	1172	31	15	17	36	1.91
346672--346725	23	2.3	23	96	0	99	50	9	3	37	1.52
351970--352026	12	4.8	12	91	8	91	19	17	26	36	1.94
352335--352428	21	4.5	21	76	5	91	45	28	0	25	1.54
352377--352449	35	2.1	35	89	5	112	43	24	0	31	1.54
352700--352740	14	3.1	14	76	20	52	41	0	4	53	1.22
356329--356384	10	5.5	10	79	12	60	67	3	5	23	1.27
356328--356384	20	2.8	19	82	10	69	66	3	5	24	1.28
356927--356973	11	4.5	10	84	10	58	23	4	2	70	1.16
356927--356973	21	2.2	21	85	7	60	23	4	2	70	1.16
357803--357868	31	2.1	31	86	5	89	27	24	12	36	1.91
362305--362354	23	2.2	23	85	0	64	40	6	24	30	1.79
362268--362428	87	1.9	87	90	0	259	43	9	14	32	1.78
362425--363148	199	3.6	196	80	8	733	31	14	14	40	1.86
366771--366834	23	2.8	22	76	9	74	26	26	26	20	1.99
370302--371471	201	5.8	199	82	3	1303	31	16	13	38	1.87
370393--371471	401	2.7	396	85	4	1434	31	16	13	39	1.87
371472--371510	15	2.6	15	87	0	51	35	7	17	38	1.79
372332--372631	162	1.9	162	92	0	510	30	17	12	40	1.86
372597--372651	20	2.8	20	88	0	83	38	12	12	36	1.82
372628--373122	180	2.7	181	83	4	629	28	15	13	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373265--373300	2	18.0	2	100	0	72	50	0	0	50	1.00
374398--374450	21	2.5	21	87	0	79	20	24	18	35	1.95
374440--374573	20	6.7	20	85	1	187	41	19	19	20	1.91
374440--374591	60	2.5	61	86	3	191	39	20	19	20	1.93
375181--375238	20	2.9	20	84	0	62	18	17	20	43	1.89
375210--375249	20	2.0	20	100	0	80	10	15	20	55	1.68
375214--375257	20	2.2	20	87	0	61	13	13	20	52	1.74
377130--377181	20	2.6	20	93	0	77	40	25	17	17	1.90
377220--377287	20	3.4	20	91	0	109	42	23	16	17	1.88
377331--377399	20	3.5	20	87	0	102	20	20	23	36	1.95
377331--377410	40	2.0	40	82	0	97	21	18	21	38	1.93
379893--379928	14	2.6	14	90	0	54	30	0	22	47	1.52
380046--380099	14	3.5	14	73	22	54	44	20	24	11	1.83
380026--380121	33	2.8	33	92	3	147	42	20	23	12	1.86
380059--380126	20	3.8	19	72	21	74	47	19	22	11	1.81
380136--380231	33	2.8	33	88	3	129	14	23	18	42	1.88
380205--380291	20	4.3	20	84	8	115	17	20	22	39	1.92
380203--380291	40	2.2	40	86	7	128	16	21	23	38	1.93
382534--382587	24	2.2	24	93	0	90	40	20	18	20	1.91
382534--382601	24	2.8	24	84	0	64	38	20	17	23	1.93
383428--383474	20	2.3	20	88	0	67	21	19	25	34	1.96
383461--383553	20	4.7	20	95	0	159	17	20	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383448--383553	40	2.7	40	88	5	135	17	19	22	39	1.92
400023--400069	20	2.3	20	85	10	60	80	0	10	8	0.89
400023--400071	16	2.7	18	84	12	57	81	0	10	8	0.87
400403--400480	18	3.9	19	80	13	79	30	8	5	55	1.53
401589--401894	113	2.7	113	92	2	501	38	16	19	26	1.92
403278--403307	11	2.7	11	94	0	51	40	10	50	0	1.36
405060--405097	18	2.1	18	85	9	51	63	0	13	23	1.30
405202--405269	33	2.1	31	84	10	84	44	5	5	44	1.52
405315--405398	35	2.3	36	84	12	100	42	5	5	45	1.53
405336--405410	40	1.9	38	86	10	107	41	5	6	46	1.53

Tables:   1   2   3   4   5   6   7