genome.fa.s5876.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005876.1 Hibiscus syriacus cultivar Beakdansim tig00013808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  777889

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203333--203371	15	2.5	15	83	4	51	66	0	5	28	1.12
203588--203659	20	3.5	20	77	9	74	26	11	29	33	1.91
209018--209181	81	2.0	81	100	0	328	41	7	8	42	1.63
215906--216270	83	4.4	82	73	8	251	31	16	16	34	1.92
217651--218045	195	2.0	199	97	2	753	27	24	17	30	1.97
219441--219534	31	3.0	30	72	9	82	36	20	14	28	1.92
219709--219739	16	1.9	16	93	0	53	45	22	0	32	1.53
219732--219773	23	1.9	21	85	9	57	35	21	9	33	1.86
223832--223876	24	1.9	23	81	4	54	35	20	6	37	1.79
225556--225612	24	2.4	24	96	0	105	26	26	17	29	1.97
225600--225760	64	2.5	64	81	9	170	23	23	20	32	1.98
238238--238327	29	3.1	30	77	4	85	41	34	3	21	1.69
238257--238331	30	2.6	29	80	2	87	41	32	4	22	1.72
248213--248242	2	15.0	2	100	0	60	50	0	0	50	1.00
251851--251996	53	2.8	53	84	4	188	50	13	10	25	1.74
252309--252349	4	10.2	4	84	10	57	73	0	4	21	1.02
252389--252442	21	2.8	18	81	15	56	62	3	3	29	1.29
252393--252443	18	2.6	19	79	11	59	62	3	3	29	1.31
252643--252706	23	2.7	23	75	18	60	65	3	1	29	1.17
253172--253275	37	2.8	36	84	5	127	31	14	14	39	1.86
254155--254206	26	2.0	26	92	0	86	38	9	13	38	1.77
263844--264052	29	7.2	29	90	1	251	33	5	20	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263844--264052	87	2.4	87	86	4	278	33	5	20	40	1.76
269483--269549	30	2.2	30	89	0	98	31	19	25	23	1.98
273096--273154	3	19.0	3	77	19	59	67	1	0	30	1.00
273100--273158	13	4.8	12	84	10	66	71	1	0	27	0.96
273096--273147	16	3.2	16	86	8	70	67	1	0	30	1.02
273489--274260	113	6.8	112	86	5	993	28	19	14	37	1.91
273489--274242	339	2.2	336	89	4	1115	28	19	14	37	1.91
274258--274413	76	2.1	76	92	0	258	34	21	19	24	1.96
275093--275170	22	3.5	22	85	3	111	41	12	11	34	1.80
277688--277907	114	1.9	114	90	1	352	30	20	15	34	1.93
286307--286340	18	1.9	17	94	5	59	2	5	35	55	1.39
286842--286891	3	16.7	3	80	15	59	64	0	0	36	0.94
287385--287428	23	1.9	23	86	9	63	20	13	11	54	1.69
293298--293328	16	1.9	16	93	0	53	35	0	3	61	1.12
295165--295237	23	3.2	23	96	0	128	41	21	2	34	1.68
295655--295727	23	3.2	23	92	0	119	38	21	5	34	1.77
294764--296345	490	3.2	489	95	1	2852	40	10	7	41	1.69
296145--296217	23	3.2	23	90	0	110	38	20	5	35	1.76
296230--296459	114	2.0	114	97	0	433	31	9	10	48	1.69
296670--296734	25	2.6	25	95	0	112	40	13	7	38	1.74
296672--296748	25	3.1	25	86	3	75	42	11	6	38	1.67
299210--300511	183	7.1	183	97	0	2415	33	16	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301736--301787	12	4.3	12	90	0	77	17	32	9	40	1.82
301724--301770	18	2.6	18	86	6	60	21	31	6	40	1.78
301736--301774	6	6.5	6	87	0	60	17	33	10	38	1.84
303285--304247	200	4.8	200	96	0	1714	31	17	14	36	1.91
304469--304529	19	3.3	18	88	2	59	52	11	1	34	1.47
304481--304529	19	2.6	19	96	0	89	55	10	2	32	1.45
305109--305149	4	10.2	4	94	0	73	48	24	0	26	1.51
306067--306093	14	1.9	14	100	0	54	33	29	7	29	1.85
306359--306424	33	2.0	33	90	0	105	22	48	0	28	1.51
306458--306522	21	3.1	21	90	0	94	16	29	10	43	1.82
308732--308778	20	2.4	19	79	10	58	21	17	10	51	1.75
308913--308959	20	2.3	20	89	10	78	17	17	10	55	1.69
308699--309171	181	2.6	182	89	1	689	26	17	13	42	1.86
310459--310506	25	2.0	24	88	12	71	60	2	0	37	1.09
325739--326255	260	2.0	260	93	2	878	34	20	17	27	1.95
326251--326275	2	12.5	2	100	0	50	52	0	0	48	1.00
328645--328679	16	2.1	17	89	5	54	37	0	22	40	1.55
333816--333849	18	1.9	17	94	5	59	44	5	0	50	1.26
334651--334688	20	1.9	19	89	5	58	36	7	28	26	1.84
335078--335152	38	2.0	37	84	5	98	48	4	1	46	1.29
334761--335231	235	2.0	235	94	0	827	41	5	8	44	1.57
335321--335474	48	3.2	48	61	23	113	24	25	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335285--335481	98	2.0	98	100	0	394	24	23	22	29	1.99
335456--335532	20	3.8	20	91	0	127	27	25	9	37	1.86
335999--336041	2	21.5	2	95	0	77	48	0	0	51	1.00
337405--337451	20	2.2	20	85	7	58	31	17	21	29	1.96
338231--338291	30	2.0	30	96	0	113	22	21	26	29	1.99
340007--340062	20	2.8	20	73	10	69	46	0	12	41	1.42
345726--345783	26	2.2	27	96	3	109	31	6	18	43	1.77
345925--345970	23	2.0	23	87	4	67	19	15	2	63	1.41
346358--346391	18	1.9	17	88	5	50	41	0	2	55	1.15
346729--346775	21	2.2	21	88	0	76	21	23	17	38	1.93
346820--346890	20	3.5	20	86	7	83	46	22	9	21	1.80
346857--346967	39	2.8	39	85	6	145	36	23	9	30	1.87
346837--346968	19	6.7	20	84	6	137	37	23	9	28	1.87
350194--350229	18	2.0	18	94	0	63	55	25	2	16	1.55
350482--350538	20	2.9	20	84	2	80	40	15	19	24	1.90
350726--350884	65	2.4	65	91	2	257	51	16	1	29	1.55
353353--353399	20	2.4	20	92	3	78	42	23	21	12	1.87
353427--353466	20	2.0	20	85	0	53	15	12	22	50	1.77
353787--353844	22	2.6	22	77	0	71	18	12	41	27	1.86
353960--353999	21	1.9	21	100	0	80	15	15	25	45	1.84
354601--354675	25	2.9	26	74	20	84	56	0	1	42	1.08
354675--354709	2	18.5	2	88	11	56	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354629--354704	22	3.3	23	76	9	66	53	0	0	46	1.00
354673--354715	12	3.3	13	87	9	61	51	2	0	46	1.13
354831--354888	23	2.6	23	97	2	109	58	3	0	37	1.15
358730--358803	20	3.7	20	80	3	94	39	18	22	18	1.93
358727--358819	41	2.3	41	98	0	177	39	17	23	19	1.92
358730--358817	20	4.3	20	78	4	86	39	18	23	18	1.92
358749--358883	41	3.3	41	80	6	114	37	20	21	20	1.94
358857--358904	20	2.4	20	89	0	69	31	25	18	25	1.98
359430--359494	19	3.4	19	84	2	76	46	26	16	10	1.80
359490--359674	19	10.1	19	77	14	174	12	22	22	43	1.86
359490--359579	39	2.3	38	94	1	153	12	20	22	45	1.83
359562--359649	33	2.6	33	92	1	140	11	25	25	38	1.89
359617--359674	20	2.9	20	80	10	64	13	24	18	43	1.87
361676--361798	42	2.9	42	80	2	122	22	36	17	22	1.95
361732--361798	21	3.2	21	66	6	55	23	35	20	19	1.95
363155--363190	14	2.6	14	95	0	63	30	0	25	44	1.54
363369--363486	19	6.7	19	66	19	76	13	23	20	42	1.88
363373--363466	33	2.8	33	98	0	179	12	24	19	43	1.85
365761--365785	12	2.1	12	100	0	50	0	28	0	72	0.86
367264--367300	14	2.6	14	86	0	56	48	21	0	29	1.50
367647--367702	20	2.8	20	94	0	94	35	21	23	19	1.96
367649--367713	20	3.3	20	85	6	62	36	20	23	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367714--367767	14	3.5	14	77	22	63	11	20	20	48	1.80
367709--367786	33	2.4	33	91	0	120	12	23	21	42	1.87
367874--367910	14	2.6	14	86	0	56	48	21	0	29	1.50
369780--369845	19	3.4	19	83	4	87	36	24	24	15	1.93
369834--369891	14	3.9	14	79	16	71	48	25	17	8	1.75
369818--369896	32	2.4	33	95	2	142	46	24	18	10	1.80
369903--369966	19	3.6	19	74	20	75	12	20	21	45	1.84
369951--370005	20	2.8	19	83	8	65	16	23	23	36	1.94
370477--370521	18	2.5	18	85	0	63	15	15	42	26	1.87
371840--371877	20	1.9	20	88	0	58	50	21	15	13	1.78

Tables:   1   2   3   4   5