genome.fa.s5876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005876.1 Hibiscus syriacus cultivar Beakdansim tig00013808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  777889

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6981--7297	157	2.0	157	98	0	616	30	32	17	19	1.95
11909--12058	2	75.5	2	87	6	207	48	3	0	48	1.18
18908--18966	22	2.6	23	86	5	84	45	5	0	49	1.24
19299--19401	46	2.3	46	84	1	136	43	9	8	37	1.69
19298--19501	45	4.5	44	75	7	140	42	8	8	40	1.66
20396--20506	20	5.8	20	78	13	108	11	24	23	40	1.88
20387--20465	34	2.4	33	85	4	97	11	25	25	37	1.89
20608--20687	6	13.7	6	88	1	101	32	51	16	0	1.45
21182--21214	6	5.7	6	96	3	59	0	18	51	30	1.46
21305--21377	20	3.6	20	74	3	74	39	23	20	16	1.92
21302--21399	41	2.4	41	94	0	169	37	25	18	18	1.93
21325--21398	21	3.6	21	74	3	78	33	27	18	20	1.96
24820--24891	31	2.3	31	82	0	99	25	6	16	51	1.69
25571--25635	29	2.2	30	81	8	80	49	0	3	47	1.17
25597--25643	14	3.3	14	77	14	51	57	0	2	40	1.11
27945--27988	12	3.8	11	79	8	52	50	34	0	15	1.45
27942--27995	23	2.3	23	96	0	99	46	38	0	14	1.45
28073--28113	21	2.0	20	85	4	55	31	2	0	65	1.05
35436--35469	17	2.0	17	100	0	68	35	17	29	17	1.93
45611--45663	21	2.5	21	78	0	61	20	28	18	32	1.97
45653--45760	20	5.4	20	79	8	121	37	24	18	20	1.94
45667--45777	40	2.7	39	82	6	132	37	25	17	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45664--45777	20	5.7	20	75	15	101	38	24	16	20	1.92
45653--45777	60	2.1	61	83	10	159	37	24	17	20	1.93
47490--47588	19	5.4	19	81	13	136	46	18	20	15	1.84
47444--47590	33	4.3	33	84	10	186	44	18	21	15	1.86
47595--47633	19	2.1	19	95	0	69	12	15	23	48	1.79
47600--47665	19	3.7	19	71	22	63	12	21	21	45	1.84
47763--47799	14	2.6	14	91	0	65	45	21	0	32	1.52
49064--49130	21	3.2	21	68	4	55	19	20	35	23	1.95
49064--49186	42	2.9	41	79	7	113	22	18	37	21	1.94
49607--49677	19	4.1	19	74	20	75	46	19	21	12	1.83
49643--49683	19	2.2	19	90	0	64	51	19	17	12	1.76
49820--50195	94	4.1	93	91	5	566	48	18	11	21	1.80
51792--51853	20	3.0	21	81	9	83	41	19	25	12	1.87
51792--51891	40	2.8	37	75	17	111	43	20	25	12	1.86
51792--51904	19	6.1	19	78	13	101	42	20	24	12	1.86
51900--51992	33	2.8	33	88	1	123	10	19	24	45	1.82
51931--52013	19	4.6	19	72	17	68	13	18	20	48	1.81
52309--52360	27	2.0	26	88	7	79	21	11	34	32	1.89
52573--52721	40	3.7	40	86	2	192	20	18	24	37	1.94
52568--52721	20	7.7	20	74	15	122	20	18	24	37	1.94
52718--52784	21	3.2	21	89	0	98	35	16	28	19	1.93
56398--56425	8	3.5	8	100	0	56	25	0	10	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56399--56434	16	2.2	16	90	0	54	27	0	11	61	1.30
67065--67099	17	2.1	17	100	0	70	28	17	17	37	1.92
69602--69826	110	2.0	111	89	1	344	26	10	8	54	1.63
74651--74699	19	2.4	22	77	19	61	28	8	34	28	1.86
74651--74705	20	2.8	19	78	15	58	32	7	32	27	1.84
76024--76062	20	2.0	20	94	0	69	23	10	12	53	1.69
79767--79849	42	2.0	42	92	4	141	32	21	18	27	1.96
81485--81539	2	27.0	2	96	3	101	49	0	1	49	1.11
86599--86641	16	2.6	16	85	10	52	23	4	9	62	1.44
90395--90464	18	3.9	18	74	7	61	32	11	10	45	1.73
91338--91366	2	14.5	2	100	0	58	51	0	0	48	1.00
91583--91695	59	1.9	58	96	1	208	38	22	15	24	1.92
93497--93539	21	2.0	21	81	4	50	27	18	25	27	1.98
96661--96734	34	2.2	34	81	11	82	21	2	12	63	1.40
96672--96748	34	2.2	34	84	11	95	20	1	14	63	1.37
99238--99285	15	3.4	14	88	5	53	39	0	43	16	1.48
99248--99285	15	2.5	15	95	0	67	36	0	47	15	1.46
105492--105548	23	2.7	22	82	15	68	22	24	31	21	1.98
110972--111012	17	2.4	17	91	0	64	7	7	21	63	1.45
110975--111017	17	2.6	17	88	3	61	9	4	23	62	1.44
116417--116452	2	18.0	2	100	0	72	50	0	0	50	1.00
116446--116485	18	2.2	19	86	4	55	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117516--117577	27	2.3	26	83	5	79	59	14	3	22	1.49
120949--121000	27	2.0	27	85	11	72	38	5	1	53	1.36
123850--123931	36	2.2	38	82	8	98	46	0	2	51	1.14
126450--126480	12	2.6	12	94	0	53	12	22	45	19	1.84
126478--126572	2	51.0	2	69	14	51	48	0	0	51	1.00
130411--130461	16	3.2	16	85	0	75	17	13	17	50	1.77
135123--135169	21	2.2	21	81	7	60	21	25	14	38	1.92
135165--135238	20	3.7	20	78	3	85	35	20	22	21	1.96
135414--135475	22	3.0	22	70	18	60	27	38	14	19	1.90
135800--135913	40	3.2	33	75	15	95	13	18	24	43	1.85
135843--135892	20	2.5	20	90	0	73	18	18	28	36	1.94
135800--135872	33	2.2	33	85	7	94	13	20	26	39	1.90
135860--135914	20	2.8	20	91	0	83	10	16	23	49	1.77
137808--137910	20	5.5	20	83	13	139	39	22	20	17	1.92
137811--137931	54	2.3	54	94	1	208	41	21	20	16	1.90
137957--138023	20	3.3	20	91	0	80	20	17	22	38	1.93
137943--138131	40	5.2	35	74	16	154	15	19	22	42	1.88
137925--138133	107	2.0	107	87	1	303	17	18	22	41	1.90
138062--138130	20	3.5	20	95	0	129	14	18	26	40	1.89
138062--138140	20	4.0	20	89	0	77	15	17	24	43	1.87
140077--140112	14	2.6	14	90	0	54	30	0	22	47	1.52
140225--140309	33	2.5	33	86	1	107	43	15	23	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140340--140435	33	2.9	34	87	3	113	43	20	21	13	1.86
140187--140438	126	2.0	126	95	0	450	41	18	21	17	1.90
140364--140435	33	2.2	33	92	2	117	45	19	22	12	1.83
140445--140514	33	2.1	33	83	0	86	14	24	17	44	1.85
140499--140585	20	4.3	20	82	2	104	20	22	21	34	1.97
140497--140575	40	2.0	41	89	2	124	22	24	18	34	1.97
143017--143071	24	2.3	24	87	3	85	41	18	18	21	1.90
143930--143997	20	3.4	20	93	4	102	20	20	23	35	1.96
143911--143997	40	2.2	40	79	8	97	22	19	22	34	1.97
144389--144424	14	2.6	14	91	4	56	63	0	0	36	0.94
144878--144919	15	2.7	16	82	10	52	40	0	2	57	1.12
153461--153643	93	2.0	93	92	0	303	32	21	16	30	1.95
167699--167733	17	2.0	18	94	5	63	31	5	22	40	1.78
174900--175246	7	47.0	7	72	19	205	53	5	0	40	1.29
174876--175243	5	72.8	5	69	20	191	53	5	0	40	1.30
175767--175796	15	2.0	15	100	0	60	40	0	26	33	1.57
178398--178441	19	2.2	20	80	4	54	25	15	0	59	1.37
178765--178789	9	2.8	9	100	0	50	56	0	0	44	0.99
179545--179661	63	1.9	59	84	6	153	45	8	10	35	1.69
179729--179805	30	2.6	30	93	0	136	32	19	14	33	1.92
180543--180608	29	2.4	28	76	5	80	36	3	21	39	1.69
181587--181614	11	2.5	11	100	0	56	50	17	7	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182688--182840	60	2.6	58	72	11	148	31	24	5	38	1.79
182970--183154	60	3.1	60	78	4	203	40	4	23	30	1.76
184721--184783	27	2.3	27	86	5	83	33	7	36	22	1.83
186966--187014	18	2.7	18	80	3	53	53	36	6	4	1.45
187131--187222	40	2.3	41	79	11	100	32	6	13	47	1.68
195716--195762	20	2.3	20	85	0	58	34	23	19	23	1.97
196333--196386	20	2.8	20	82	2	74	12	14	22	50	1.77
197869--197965	42	2.3	42	85	0	122	29	34	17	18	1.94
198080--198129	21	2.4	21	75	0	55	18	12	36	34	1.87
202716--202749	12	2.8	12	90	0	50	14	0	29	55	1.40

Tables:   1   2   3   4   5