genome.fa.s5876.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005876.1 Hibiscus syriacus cultivar Beakdansim tig00013808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  777889

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556525--556894	90	4.1	93	94	4	654	22	12	19	46	1.83
556525--556894	181	2.0	180	93	5	642	22	12	19	46	1.83
556937--556998	17	3.4	19	82	10	76	43	27	17	11	1.83
556937--557031	19	5.4	18	77	16	85	44	28	17	9	1.80
556972--557056	31	2.8	28	81	18	100	45	27	18	8	1.78
557057--557150	35	2.8	33	87	7	145	10	20	21	47	1.79
557052--557187	19	7.6	19	72	18	96	11	19	22	47	1.81
558769--558815	24	2.0	24	87	8	69	38	21	14	25	1.92
559486--559846	20	18.2	20	86	5	421	20	18	25	34	1.96
559814--559967	20	7.8	19	69	9	58	18	18	24	37	1.94
562722--563032	153	2.0	157	96	3	585	34	18	20	26	1.96
566781--566816	15	2.4	15	95	0	63	61	2	5	30	1.33
566854--566885	16	1.9	17	93	6	57	34	3	0	62	1.11
567461--567952	151	3.2	154	83	7	638	29	17	6	46	1.74
568753--568812	23	2.6	22	76	7	66	23	16	15	45	1.85
570105--570186	43	1.9	43	94	0	146	47	10	4	36	1.60
579481--579687	39	5.5	37	67	17	124	32	14	13	40	1.84
579402--579713	75	4.2	75	85	3	398	32	14	12	41	1.83
579457--579575	39	3.1	39	68	18	113	34	15	13	36	1.86
579402--579713	151	2.1	149	86	4	432	32	14	12	41	1.83
579683--580015	40	8.3	40	90	1	490	29	15	13	42	1.85
579957--580049	39	2.4	39	85	3	116	32	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580070--580298	43	5.3	43	82	5	266	28	12	29	29	1.93
580070--580310	129	1.9	129	89	3	378	29	12	29	29	1.93
580362--580680	90	3.6	90	90	3	484	26	19	19	34	1.96
581389--581590	102	2.0	100	98	1	386	38	10	16	34	1.84
584452--584800	175	2.0	173	97	2	664	38	9	12	39	1.76
588259--588363	23	4.5	23	75	3	102	57	19	11	12	1.65
588259--588368	47	2.3	47	87	0	157	57	18	10	13	1.65
588617--588673	10	5.3	10	80	15	69	66	19	5	8	1.38
588602--588663	24	2.6	24	87	5	81	64	17	8	9	1.47
588613--588693	34	2.4	34	100	0	162	64	18	8	8	1.47
588622--588704	24	3.5	24	80	9	80	63	19	8	8	1.47
588613--588697	10	7.7	10	75	19	62	63	18	9	8	1.49
595224--595283	31	1.9	31	89	0	93	41	6	10	41	1.65
595750--595794	17	2.6	17	80	10	56	57	0	2	40	1.11
595750--595792	18	2.5	17	85	7	52	60	0	2	37	1.10
595789--595869	24	3.1	26	77	12	69	56	1	0	41	1.07
601379--601451	37	2.0	37	94	0	128	15	24	12	47	1.79
602077--602131	3	18.3	3	96	0	101	65	1	0	32	1.03
604601--604733	42	3.2	42	65	24	111	30	10	17	41	1.83
608407--608481	31	2.4	31	89	8	125	33	9	9	48	1.68
608602--608664	27	2.3	27	80	0	72	60	0	4	34	1.18
612106--612215	29	3.8	29	81	4	114	39	16	18	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612795--612819	13	1.9	13	100	0	50	40	16	20	24	1.91
615685--615735	22	2.2	23	86	6	68	47	17	19	15	1.83
617474--617513	18	2.2	18	90	0	62	15	30	40	15	1.87
620028--620103	35	2.2	35	90	0	116	39	22	1	36	1.63
620500--620747	130	1.9	130	94	0	433	36	14	12	35	1.85
620514--620778	130	2.0	129	82	4	318	39	13	13	33	1.83
621111--621268	76	2.1	74	81	10	178	41	3	8	46	1.51
621145--621248	36	2.8	37	82	7	113	43	2	6	47	1.44
621179--621513	36	9.6	34	71	21	164	41	4	7	46	1.53
621257--621307	25	2.1	25	92	3	86	41	3	5	49	1.45
621220--621341	61	2.0	62	93	4	212	40	4	9	45	1.57
621270--621513	36	6.8	36	76	16	192	41	5	7	45	1.55
621398--621458	31	2.0	29	84	9	77	42	6	4	45	1.51
621522--621570	19	2.6	19	76	0	53	28	2	0	69	1.00
622830--622859	13	2.2	14	94	5	53	23	0	0	76	0.78
623465--623527	28	2.3	27	78	8	63	46	1	3	49	1.27
623607--623640	16	2.0	18	88	11	54	64	5	2	26	1.30
632815--632861	24	1.9	25	86	4	69	29	21	10	38	1.87
636923--637242	103	3.1	103	95	0	554	26	12	24	36	1.91
637259--637316	23	2.5	23	88	0	80	17	25	31	25	1.97
637249--637326	23	3.3	23	78	1	66	21	19	24	34	1.96
640499--640542	21	2.1	21	86	0	61	31	27	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642066--642387	103	3.1	103	96	0	590	26	13	23	36	1.92
642404--642460	23	2.5	23	88	0	78	17	26	29	26	1.97
642394--642471	23	3.3	23	78	1	66	21	20	23	34	1.97
647224--647464	103	2.3	102	96	2	446	25	13	23	37	1.92
647430--647502	21	3.3	21	65	20	58	23	13	24	38	1.91
647419--647510	46	2.0	46	100	0	184	23	13	23	39	1.90
647316--647591	149	1.9	149	96	1	509	25	13	23	36	1.92
650316--650372	12	4.6	12	73	6	51	56	0	3	40	1.17
650309--650371	25	2.5	25	94	0	108	55	0	4	39	1.21
650327--650371	12	3.7	12	82	5	63	60	0	2	37	1.09
651461--651683	30	7.4	30	95	0	392	34	23	18	23	1.97
652349--652509	64	2.5	62	77	9	164	25	23	19	31	1.98
654922--655084	30	5.4	30	90	0	245	33	22	17	26	1.96
655067--655162	31	3.1	30	74	12	88	32	20	19	27	1.97
655705--655761	20	2.8	20	91	0	96	28	21	21	29	1.98
657260--657316	9	6.7	9	75	18	59	45	0	0	54	0.99
657261--657322	16	4.2	16	73	23	64	43	0	0	56	0.99
657229--657333	42	2.5	42	82	4	113	50	0	0	49	1.00
657264--657312	26	1.9	25	91	4	80	46	0	0	53	1.00
657306--657368	25	2.5	26	82	10	76	53	0	0	46	1.00
663819--663846	2	14.0	2	100	0	56	50	0	0	50	1.00
664695--664740	21	2.2	21	92	0	74	21	30	4	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664701--664743	21	2.0	21	100	0	86	18	30	4	46	1.69
671768--672121	177	2.0	177	98	0	681	24	12	28	34	1.92
674994--675033	19	2.0	20	85	9	55	57	0	5	37	1.21
675587--675625	11	3.5	11	93	6	62	15	0	2	82	0.79
678219--678264	2	23.0	2	100	0	92	50	0	0	50	1.00
689508--689626	31	3.8	30	82	5	121	39	8	1	50	1.43
689675--689725	24	2.1	25	85	3	68	60	0	3	35	1.15
689678--689725	23	2.0	25	84	8	64	62	0	4	33	1.14
689729--690036	118	2.6	119	77	9	315	52	0	8	37	1.36
689721--690008	148	2.0	145	80	6	321	52	0	8	38	1.35
689719--690018	30	10.1	30	75	7	238	53	0	8	38	1.36
690026--690071	18	2.6	18	89	0	74	41	0	15	43	1.46
692981--693010	11	2.8	11	95	5	53	33	0	0	66	0.92
693430--693478	24	2.0	24	100	0	98	42	20	20	16	1.89
693798--693849	2	26.0	2	100	0	104	50	0	0	50	1.00
695458--695629	57	3.0	57	93	1	283	30	5	11	52	1.60
699106--699187	22	3.8	22	81	1	94	20	24	29	25	1.99
706009--706054	21	2.2	21	88	7	67	36	36	10	15	1.82
710334--710365	3	11.3	3	87	12	50	65	0	0	34	0.93
710624--711226	52	11.6	52	94	1	1059	28	25	16	28	1.97
710624--711226	155	3.9	156	96	1	1077	28	25	16	28	1.97
710623--711226	207	2.9	207	95	1	1077	28	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711092--711176	28	3.2	28	63	13	79	32	24	15	27	1.95
711222--711502	55	5.1	55	92	2	476	27	29	14	28	1.96
711222--711502	108	2.6	110	93	2	494	27	29	14	28	1.96
712781--712883	8	12.5	8	79	10	66	8	12	0	78	0.96
712794--712828	14	2.8	12	84	16	52	0	20	0	80	0.72
712786--712874	26	3.6	24	77	11	74	7	13	0	78	0.95
712781--712883	16	6.2	17	76	12	83	8	12	0	78	0.96
712810--712883	33	2.2	32	83	11	87	9	12	0	78	0.97
712781--712883	9	12.4	9	81	11	91	8	12	0	78	0.96
712837--712884	17	2.9	17	75	25	57	10	10	0	79	0.95

Tables:   1   2   3   4   5