Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005876.1 Hibiscus syriacus cultivar Beakdansim tig00013808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  777889

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 503 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
721798--721829
3
11.3
3
87
12
50
65
0
0
34
0.93
731123--731164
2
21.0
2
100
0
84
50
0
0
50
1.00
735562--735607
17
2.7
16
81
15
56
6
17
6
69
1.32
744968--745023
29
1.9
29
92
0
94
10
35
30
23
1.89
745039--745148
33
3.3
33
87
2
150
11
34
30
23
1.91
747471--747910
74
5.9
72
78
14
365
42
3
8
45
1.52
747498--747910
39
11.1
36
79
12
365
42
3
8
45
1.51
747747--747888
72
2.0
72
84
8
191
44
4
7
44
1.50
747471--747899
151
2.8
149
81
12
493
43
3
8
44
1.51
747914--747955
22
1.9
22
85
0
57
23
4
4
66
1.30
749545--749574
13
2.3
13
100
0
60
40
0
0
60
0.97
757790--757852
23
2.8
23
75
2
65
57
3
12
26
1.51
758518--758594
37
2.1
37
85
4
102
46
2
3
46
1.34
758742--758779
20
1.9
20
88
0
58
26
26
5
42
1.76
760274--760313
20
2.0
20
90
4
64
22
7
2
67
1.28
760392--760424
16
2.0
17
88
5
50
63
0
0
36
0.95
761825--761853
15
1.9
15
100
0
58
48
10
0
41
1.37
766015--766065
17
2.9
18
77
8
61
43
0
1
54
1.11
766824--766876
27
2.0
27
96
3
99
3
20
11
64
1.42
767014--767048
2
18.0
2
94
5
63
48
0
0
51
1.00
769209--769678
238
2.0
238
95
2
847
46
13
8
31
1.73
772036--772085
24
2.0
24
84
7
64
64
2
0
34
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
777323--777362
19
2.1
19
100
0
80
32
15
27
25
1.95

Tables:   1   2   3   4   5

The End!