genome.fa.s5946.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005946.1 Hibiscus syriacus cultivar Beakdansim tig00013960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2465359

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662664--662707	22	1.9	24	86	9	65	29	40	4	25	1.75
667575--667639	31	2.1	31	94	0	112	30	9	4	55	1.52
667579--667651	31	2.4	31	88	0	92	28	10	8	52	1.65
673483--673529	23	2.0	24	84	12	62	46	6	0	46	1.28
673905--673946	20	2.1	20	82	8	50	40	0	16	42	1.48
677154--677219	30	2.2	31	91	2	107	59	1	0	39	1.07
677154--677219	10	6.5	10	69	1	51	59	1	0	39	1.07
677185--677225	21	2.0	20	86	9	57	53	0	2	43	1.13
677185--677234	20	2.5	21	83	6	59	54	0	2	44	1.11
677523--677610	34	2.4	37	77	12	92	54	4	3	37	1.38
679703--679747	21	2.1	21	84	12	56	35	17	28	17	1.93
683232--683258	2	13.5	2	100	0	54	48	0	0	51	1.00
684379--684425	20	2.3	20	85	7	60	25	17	29	27	1.97
684905--684977	22	3.3	21	81	11	76	23	15	21	39	1.91
699285--699345	31	2.0	31	100	0	122	19	22	29	27	1.98
699333--699389	29	2.0	29	92	0	96	15	33	29	21	1.94
699586--699643	29	2.0	29	89	0	89	25	27	32	13	1.94
699913--699950	2	19.0	2	100	0	76	50	0	0	50	1.00
703400--703519	55	2.2	55	83	3	152	28	15	18	37	1.92
704357--704439	35	2.4	35	70	9	89	42	0	1	56	1.07
707118--707156	12	3.0	13	85	7	53	46	2	0	51	1.14
710816--710845	2	14.5	2	93	6	51	46	3	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713354--713402	24	2.0	24	92	0	80	34	20	12	32	1.90
717078--717206	69	1.9	69	91	0	213	34	14	10	40	1.80
722660--722686	12	2.2	12	100	0	54	48	22	7	22	1.75
722977--723019	21	2.0	21	100	0	86	39	9	23	27	1.85
737342--737371	7	4.4	7	95	4	53	0	0	10	90	0.47
738813--738934	59	2.0	60	85	1	165	38	20	13	27	1.90
743014--743058	21	2.1	21	95	0	81	33	6	11	48	1.65
746094--746132	20	2.0	21	90	10	64	64	0	2	33	1.08
746932--746972	16	2.6	16	96	0	73	58	0	4	36	1.20
746934--746985	16	3.2	16	81	10	61	59	0	5	34	1.21
761247--761295	21	2.5	18	81	15	53	46	8	14	30	1.73
762120--762167	18	2.7	18	87	3	62	31	8	31	29	1.87
766006--766044	19	2.1	19	85	9	53	25	0	17	56	1.41
775998--776080	40	2.1	40	84	4	105	31	9	6	53	1.58
777082--777149	35	1.9	35	82	11	86	25	17	5	51	1.68
777168--777213	21	2.2	21	84	0	56	47	8	17	26	1.76
777177--777219	21	2.0	21	81	0	50	37	11	20	30	1.89
778479--778518	21	2.0	20	85	5	53	52	0	2	45	1.14
781570--781622	24	2.2	24	89	0	79	32	13	20	33	1.91
792423--792451	2	14.5	2	100	0	58	48	0	0	51	1.00
795750--795802	19	2.8	18	80	8	61	37	7	20	33	1.81
795883--795912	2	15.0	2	92	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
807351--807393	2	21.5	2	100	0	86	48	0	0	51	1.00
817531--817572	16	2.6	16	92	3	66	57	0	19	23	1.41
823858--823896	16	2.5	16	83	4	53	66	0	2	30	1.05
825075--825111	6	6.2	6	87	12	58	35	0	0	64	0.94
825075--825111	17	2.1	17	90	10	56	35	0	0	64	0.94
827995--828031	19	1.9	19	89	10	58	45	10	8	35	1.69
831754--831836	29	2.8	29	92	1	139	43	9	14	32	1.78
836522--836604	29	2.8	29	92	1	139	43	9	14	32	1.78
846102--846144	19	2.4	18	88	7	61	69	11	0	18	1.17
847365--847427	23	2.7	23	100	0	126	28	26	22	22	1.99
849603--849665	3	21.0	3	86	0	90	69	0	0	30	0.88
849875--849987	37	3.0	37	89	2	181	39	7	28	24	1.81
850161--850205	22	2.1	22	83	4	56	44	13	4	37	1.64
850232--850278	21	2.3	20	85	3	58	34	21	12	31	1.91
850285--850334	20	2.5	20	86	0	64	30	14	18	38	1.89
853464--853549	20	4.3	20	72	10	77	37	19	11	31	1.88
866722--866758	18	2.2	18	85	9	51	35	2	0	62	1.10
873017--873209	56	3.5	56	85	5	266	38	13	17	29	1.89
879089--879149	18	3.4	18	71	15	63	3	13	31	52	1.56
882574--882633	24	2.5	22	79	12	66	51	0	3	45	1.17
889112--889171	29	2.1	28	87	3	84	30	31	21	16	1.96
889099--889171	6	13.2	6	72	13	59	31	30	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889130--889170	17	2.4	17	91	0	64	31	34	19	14	1.92
897473--897607	71	1.9	70	81	1	162	23	16	14	45	1.84
899935--899989	25	2.1	25	81	15	67	45	12	0	41	1.42
900254--900310	9	6.6	8	75	13	51	77	1	3	17	1.00
905124--906007	177	5.0	177	92	2	1426	29	18	17	34	1.93
906354--906400	5	9.8	5	88	6	53	25	0	0	74	0.82
906489--906514	2	13.0	2	100	0	52	50	0	0	50	1.00
908995--909030	17	2.1	17	89	0	54	61	0	5	33	1.19
909872--909911	21	1.9	21	85	10	55	12	30	40	17	1.86
916487--916539	22	2.5	22	82	11	65	56	3	1	37	1.28
916746--916918	57	3.0	57	92	1	294	27	10	24	36	1.89
917095--917133	16	2.5	16	87	4	53	38	23	2	35	1.68
927592--927618	2	13.5	2	100	0	54	48	0	0	51	1.00
927739--927773	7	4.6	8	86	13	56	51	0	8	40	1.33
927738--927780	22	2.0	21	90	4	68	51	0	9	39	1.34
927739--927773	15	2.3	15	90	9	54	51	0	8	40	1.33
927742--927789	22	2.2	22	81	7	53	52	0	10	37	1.36
928035--928082	17	2.7	17	90	6	69	56	4	2	37	1.30
928045--928082	15	2.4	16	86	8	51	55	5	0	39	1.23
928033--928129	39	2.5	39	85	9	126	53	4	4	38	1.39
928033--928206	12	13.8	12	66	15	75	50	5	6	36	1.53
929064--929124	26	2.3	26	97	0	113	19	19	29	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934761--934845	29	2.9	29	100	0	170	17	31	27	23	1.97
934914--935001	14	6.3	14	93	0	149	6	27	42	23	1.79
937130--937168	13	3.0	13	80	0	51	43	23	10	23	1.84
937182--937264	41	2.0	41	100	0	166	38	25	7	28	1.82
937948--937987	15	2.7	15	96	3	73	52	27	5	15	1.63
938878--939638	162	4.8	162	83	7	853	19	31	11	38	1.86
939113--939568	147	3.0	148	86	7	569	19	32	10	37	1.86
938957--939567	309	2.0	309	86	2	861	19	32	10	37	1.86
940962--941035	20	3.7	20	80	3	94	40	18	22	17	1.91
940979--941054	21	3.7	21	78	3	91	42	18	23	15	1.89
940962--941054	41	2.3	41	98	0	177	40	18	23	17	1.90
941065--941137	20	3.7	20	86	0	101	27	27	17	27	1.98
941325--941368	22	2.0	22	86	8	63	18	47	15	18	1.83
941629--941666	20	1.9	20	88	0	58	13	15	21	50	1.78
942983--943027	18	2.5	18	85	0	63	26	42	15	15	1.87
943505--943557	20	2.7	20	87	0	79	35	24	24	15	1.94
943552--943622	32	2.2	32	87	7	99	49	23	19	7	1.73
943651--943708	14	3.9	14	77	16	62	10	15	24	50	1.75
943646--943795	33	4.4	33	80	14	180	12	20	22	44	1.84
943697--943835	39	3.7	39	76	17	159	13	23	23	39	1.90
943665--943838	71	2.4	71	94	1	303	13	22	22	41	1.88
943709--943835	20	6.8	19	74	16	88	14	24	22	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945805--945920	33	3.4	33	78	11	124	44	18	21	15	1.86
945834--945920	19	4.8	19	82	10	112	48	14	20	16	1.81
945824--945920	38	2.8	33	79	14	122	47	16	20	15	1.83
945939--945976	20	1.9	20	94	0	67	15	21	23	39	1.92
947031--947084	24	2.2	24	86	0	72	25	16	18	38	1.92
947258--947282	12	2.1	12	100	0	50	72	0	28	0	0.86
950934--951108	20	9.8	19	73	15	92	44	22	22	11	1.84
950983--951019	14	2.6	14	100	0	74	40	24	27	8	1.83
950959--951052	47	2.0	48	91	2	154	38	25	25	10	1.88
951043--951113	19	3.7	19	90	3	115	46	22	19	11	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11