genome.fa.s6023.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006023.1 Hibiscus syriacus cultivar Beakdansim tig00014213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1315283

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668450--668511	32	1.9	32	90	6	99	61	9	11	17	1.56
672631--672675	9	4.9	9	83	2	54	75	4	2	17	1.07
672644--672682	18	2.2	17	90	4	60	76	5	0	17	0.96
674553--674583	5	6.0	5	96	3	53	41	0	0	58	0.98
682226--682268	3	13.7	3	85	9	59	62	4	0	32	1.15
682453--682549	41	2.4	41	92	0	158	24	20	27	26	1.99
686385--686427	16	2.7	16	89	7	61	58	9	18	13	1.62
690678--690782	3	35.7	3	84	7	126	61	0	1	36	1.07
690678--690815	62	2.2	62	100	0	276	59	0	2	37	1.12
692609--692681	21	3.5	21	81	1	85	35	17	26	20	1.95
692670--692764	20	4.7	20	80	2	82	35	23	17	23	1.95
692952--692995	22	2.0	22	95	0	79	20	45	15	18	1.85
693259--693296	20	1.9	20	88	0	58	13	15	21	50	1.78
694614--694658	18	2.5	18	88	0	72	26	44	15	13	1.83
695124--695169	20	2.3	20	88	0	65	36	26	21	15	1.93
695179--695236	14	3.9	14	79	16	71	48	24	17	10	1.78
695163--695253	32	2.8	32	93	3	146	48	21	17	12	1.80
695270--695327	14	3.9	14	79	16	71	8	17	25	48	1.75
695265--695343	32	2.4	33	95	2	142	10	18	24	46	1.80
695286--695385	19	5.5	19	77	12	77	14	21	22	43	1.87
695328--695382	20	2.8	19	89	5	83	18	25	21	34	1.96
697242--697277	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697447--697504	20	2.9	20	89	0	89	17	20	22	39	1.92
697986--698116	19	7.7	19	66	23	94	42	19	22	14	1.88
697986--698112	33	3.8	33	88	4	202	42	19	22	14	1.88
697987--698119	66	2.0	66	97	0	248	41	19	22	16	1.90
698295--698331	14	2.6	14	91	0	65	45	24	0	29	1.53
699687--699753	21	3.2	21	68	4	55	19	20	35	23	1.95
699687--699809	42	2.9	41	80	7	113	22	17	36	22	1.95
700913--700955	21	2.0	22	82	13	54	48	2	4	44	1.36
701833--701931	33	3.0	33	87	1	135	39	25	23	12	1.89
701808--701992	19	10.1	19	76	14	165	43	21	22	12	1.86
701903--701992	39	2.3	38	94	1	153	46	22	20	11	1.81
701988--702028	19	2.2	19	86	0	55	9	17	24	48	1.76
702623--702676	20	2.7	20	97	0	99	25	18	24	31	1.97
702583--702697	61	1.9	61	81	3	142	21	20	23	34	1.96
703624--703668	2	23.0	2	93	4	74	53	0	0	46	1.00
703617--703676	14	4.5	13	87	6	68	56	1	0	41	1.09
703617--703681	20	3.2	21	80	8	64	56	1	0	41	1.08
705440--705539	28	3.6	28	83	2	121	24	1	31	44	1.61
707731--707774	11	3.9	11	76	5	52	34	20	15	29	1.94
707720--707777	23	2.6	22	83	2	71	31	17	20	31	1.96
707746--707843	24	4.2	24	71	15	73	24	13	21	40	1.89
709754--709801	3	16.7	3	87	8	64	64	0	4	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710092--710328	40	5.5	42	73	14	184	21	18	35	24	1.95
709991--710346	131	2.7	132	86	2	455	22	18	34	25	1.96
710449--710594	66	2.2	64	86	2	202	42	16	10	30	1.82
710754--710817	32	2.0	32	84	0	83	28	32	14	25	1.94
711867--711915	13	3.6	14	81	15	50	4	12	4	79	1.01
711862--711918	25	2.2	26	82	14	66	3	14	3	78	1.01
711867--711923	14	4.1	15	79	18	54	5	12	3	78	1.03
715773--716026	30	8.6	30	71	6	153	56	11	13	18	1.67
715877--715923	21	2.2	21	78	14	53	51	12	14	21	1.76
716178--716318	76	1.9	76	85	8	198	56	14	7	21	1.64
716793--716824	15	2.1	15	100	0	64	6	31	25	37	1.81
717539--717573	3	11.7	3	88	11	54	68	0	0	31	0.90
718808--719367	282	2.0	282	90	2	883	30	17	17	34	1.93
719635--719673	3	14.0	3	84	15	57	33	0	0	66	0.92
719635--719673	8	4.8	8	90	6	60	33	0	0	66	0.92
719765--719794	14	2.1	14	93	0	51	30	40	20	10	1.85
721700--721758	29	2.0	29	100	0	118	23	13	13	49	1.78
725554--725695	21	6.8	20	84	11	162	21	35	19	22	1.96
725585--725672	13	6.9	13	70	23	55	21	35	20	22	1.96
725554--725695	42	3.4	41	89	5	189	21	35	19	22	1.96
725716--725790	20	3.7	20	85	3	105	18	28	24	29	1.98
725716--725798	41	2.0	41	92	0	139	19	26	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725902--725941	20	1.9	21	85	10	55	37	37	10	15	1.80
727047--727094	19	2.5	20	82	3	62	52	6	12	29	1.63
728327--728385	30	2.0	30	93	3	102	35	6	13	44	1.71
728466--728543	21	3.8	20	79	15	79	24	33	20	21	1.97
728564--728638	20	3.7	20	82	3	96	20	26	24	29	1.99
728564--728646	41	2.0	41	90	0	130	20	25	26	27	1.99
729004--729073	34	2.1	32	86	5	95	31	15	30	22	1.95
730314--730372	29	2.0	29	100	0	118	23	13	13	49	1.78
734974--735026	17	3.2	16	84	12	63	37	1	1	58	1.20
741394--741439	22	2.2	21	84	7	58	36	23	0	39	1.55
742771--742844	20	3.8	20	72	16	73	40	25	18	14	1.89
742764--742839	39	1.9	39	94	0	134	36	27	17	18	1.93
742764--742821	19	3.0	19	76	19	66	34	29	17	18	1.94
744014--744087	36	2.1	36	89	0	112	36	16	31	16	1.91
744101--744137	12	3.0	12	92	4	56	18	54	16	10	1.71
744165--744237	32	2.3	30	84	13	101	50	0	0	49	1.00
746150--746189	2	20.0	2	89	0	62	50	5	0	45	1.23
746586--746724	64	2.2	64	80	2	154	25	17	28	28	1.98
747400--747533	26	6.0	23	70	20	81	50	3	2	43	1.32
747396--747556	18	8.8	18	67	20	61	50	3	1	44	1.30
747515--747556	18	2.4	18	92	4	68	47	4	0	47	1.23
747413--747614	93	2.2	93	87	7	293	47	4	4	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747611--747744	69	1.9	69	89	3	207	47	2	5	44	1.37
747673--747697	13	1.9	13	100	0	50	48	8	4	40	1.51
747811--747866	2	28.0	2	89	7	87	46	0	1	51	1.11
748246--748287	2	21.5	2	90	4	68	47	0	0	52	1.00
749302--749351	23	2.1	24	92	3	84	46	4	2	48	1.32
749595--749665	16	4.4	16	92	0	115	42	14	23	19	1.88
751664--751714	21	2.4	21	84	12	61	15	9	0	74	1.06
751698--751724	12	2.2	12	100	0	54	7	14	0	77	0.97
761449--761489	21	2.0	21	85	4	57	29	7	2	60	1.36
761547--761580	16	2.1	17	88	5	52	64	0	0	35	0.94
763607--763643	19	2.1	19	90	10	60	64	0	0	35	0.94
763680--763721	2	21.0	2	100	0	84	50	0	0	50	1.00
769311--769356	19	2.5	18	86	6	65	34	2	4	58	1.30
769316--769357	19	2.2	19	95	0	75	28	2	4	64	1.26
770491--770524	16	2.1	17	88	5	52	64	0	0	35	0.94
777200--777273	14	5.8	12	76	20	62	22	1	6	68	1.20
777191--777276	40	2.2	38	91	4	145	24	1	10	63	1.32
777210--777271	11	5.0	11	78	17	52	24	1	4	69	1.17
786546--786606	21	3.2	21	65	29	64	42	21	4	31	1.74
786495--786613	35	3.3	36	90	4	188	43	20	5	31	1.73
786495--786641	35	4.2	36	85	8	171	42	19	6	31	1.76
791118--791237	35	3.3	36	89	5	181	43	20	5	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791169--791229	21	3.2	21	65	29	64	42	21	4	31	1.74
791120--791265	35	4.1	36	83	12	135	41	19	6	32	1.76
791391--791450	28	2.2	28	90	3	95	26	30	0	43	1.55
794901--794976	29	2.5	30	79	10	84	56	10	6	26	1.57
798800--798826	7	3.9	7	100	0	54	29	0	0	70	0.88
799660--799724	31	2.1	31	88	0	94	21	16	12	49	1.79
806001--806248	38	6.6	37	87	5	322	46	2	6	45	1.40
806225--806276	26	1.9	26	84	7	68	44	1	7	46	1.43
806324--806353	15	2.0	15	93	0	51	16	3	0	80	0.85
806813--806974	83	2.0	83	88	0	243	33	15	22	27	1.95

Tables:   1   2   3   4   5   6   7   8