genome.fa.s6023.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006023.1 Hibiscus syriacus cultivar Beakdansim tig00014213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1315283

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 899 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200274--1200302	2	14.5	2	100	0	58	51	0	0	48	1.00
1203473--1203535	26	2.4	26	85	15	78	52	30	4	12	1.60
1204805--1204845	19	2.4	17	84	15	50	24	9	12	53	1.68
1220989--1221028	21	1.9	21	100	0	80	32	10	22	35	1.87
1226245--1226270	12	2.2	12	100	0	52	38	19	0	42	1.51
1236657--1236685	6	4.8	6	100	0	58	34	0	13	51	1.42
1238625--1238693	23	3.0	23	84	0	93	31	26	23	18	1.97
1240093--1240127	18	1.9	18	94	0	61	17	22	31	28	1.96
1242700--1242798	23	4.3	23	77	5	103	23	21	23	32	1.98
1243222--1243276	25	2.2	26	84	15	73	29	0	7	63	1.21
1244755--1244984	20	11.6	19	78	9	142	40	25	11	23	1.87
1244839--1244965	60	2.1	61	86	2	177	43	23	12	20	1.86
1244930--1244985	19	2.9	19	100	0	112	41	21	5	32	1.76
1244893--1244991	19	5.1	19	83	3	90	39	22	9	29	1.85
1246257--1246301	23	2.0	23	86	0	63	26	28	24	20	1.99
1246749--1246833	29	3.0	29	87	5	129	38	11	9	40	1.74
1247121--1247158	20	1.9	20	88	0	58	10	31	34	23	1.89
1247123--1247269	65	2.2	66	87	3	217	17	25	26	29	1.98
1247249--1247291	21	2.0	21	86	0	59	16	25	27	30	1.97
1253326--1253370	23	2.0	23	86	0	63	26	28	24	20	1.99
1253351--1253652	149	2.0	149	98	0	577	37	19	15	27	1.92
1253821--1253905	29	3.0	29	87	5	129	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254324--1254366	21	2.0	21	86	0	59	16	25	27	30	1.97
1254195--1254344	67	2.2	67	90	2	230	17	26	26	29	1.97
1257352--1257387	18	2.0	18	94	0	63	55	25	2	16	1.55
1257620--1257693	20	3.7	20	94	0	130	41	21	18	17	1.90
1257618--1257718	40	2.8	34	78	16	112	43	21	17	16	1.88
1257714--1257751	20	1.9	20	94	0	67	23	21	21	34	1.97
1257703--1257845	54	2.7	54	85	3	209	32	22	18	26	1.97
1257946--1257972	14	1.9	14	100	0	54	44	22	0	33	1.53
1257892--1257994	46	2.1	48	84	12	129	50	13	2	33	1.57
1259388--1259486	21	4.7	21	77	8	103	22	22	33	22	1.97
1259387--1259486	42	2.4	42	78	9	123	23	22	33	22	1.98
1259783--1259837	21	2.6	21	97	0	101	36	30	12	20	1.90
1261654--1261794	20	7.4	20	82	10	170	48	22	16	12	1.78
1261654--1261766	34	3.1	34	74	18	120	48	22	16	12	1.79
1271687--1271716	14	2.1	14	93	0	51	43	23	0	33	1.54
1273457--1273541	31	2.7	30	80	10	91	54	3	1	41	1.25
1273452--1273519	19	3.5	20	73	15	54	54	1	2	41	1.24
1275699--1275752	27	2.0	28	96	3	101	55	12	14	16	1.69
1276424--1276482	29	2.0	29	100	0	118	49	3	3	44	1.36
1276427--1276490	29	2.2	29	91	2	101	51	4	3	40	1.38
1277497--1277539	21	2.0	21	81	0	50	30	30	25	13	1.94
1278067--1278377	147	2.1	146	91	4	493	26	17	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278345--1278389	23	2.0	23	86	0	63	20	26	26	26	1.99
1284054--1284096	21	2.0	21	81	0	50	30	30	25	13	1.94
1284638--1284942	150	2.0	150	94	0	540	26	16	21	34	1.95
1284921--1284967	23	2.0	23	87	0	67	23	23	27	25	2.00
1288358--1288393	18	2.0	18	100	0	72	38	27	11	22	1.88
1288618--1288655	13	3.2	12	82	10	51	73	0	0	26	0.83
1295790--1295834	20	2.2	20	100	0	90	66	8	24	0	1.20
1298275--1298353	30	2.6	30	80	6	88	29	5	29	36	1.79
1298332--1298415	34	2.5	34	86	3	107	11	7	38	42	1.69
1303042--1303391	167	2.1	166	86	4	474	35	12	16	36	1.86
1306438--1306534	4	25.0	4	69	10	51	68	3	8	20	1.30
1306487--1306511	10	2.5	10	100	0	50	80	0	8	12	0.92
1308521--1308969	104	4.4	104	91	5	738	24	18	25	32	1.97
1308818--1309135	156	2.0	160	96	3	592	23	17	25	33	1.96
1309901--1309930	1	30.0	1	100	0	60	0	0	0	100	0.00

Tables:   1   2   3   4   5   6   7   8

The End!