genome.fa.s6071.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006071.1 Hibiscus syriacus cultivar Beakdansim tig00014370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  851632

Tables:   1   2   3   4   

This is table  2  of  4  ( 405 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315926--315981	30	1.9	30	85	3	78	42	3	1	51	1.29
316178--316206	13	2.1	14	93	6	51	10	0	6	82	0.83
316765--316798	16	2.1	17	88	5	52	58	0	0	41	0.98
321208--321250	15	2.9	15	83	16	63	51	0	0	48	1.00
321208--321250	14	3.1	13	84	15	59	51	0	0	48	1.00
325919--325966	2	24.0	2	91	0	78	50	4	0	45	1.21
327306--328971	88	19.0	88	67	6	561	29	20	20	29	1.98
327261--328966	44	38.8	44	65	10	375	29	20	20	29	1.98
327232--328971	132	13.2	132	89	1	2508	29	20	20	29	1.98
329349--329438	21	4.6	20	73	21	84	42	13	18	25	1.87
329325--329421	36	2.7	36	93	1	158	42	12	20	24	1.87
329678--329795	39	3.0	39	91	0	191	35	15	20	28	1.93
329798--329973	74	2.3	77	87	4	243	42	13	15	28	1.85
334644--334707	2	33.5	2	90	9	107	50	0	0	50	1.00
334644--334707	13	4.8	14	88	11	107	50	0	0	50	1.00
348309--348465	21	7.8	20	72	7	84	38	24	17	19	1.92
348432--348677	20	12.2	20	83	6	248	36	24	18	19	1.94
349386--349432	24	2.0	24	87	8	69	25	14	21	38	1.92
349607--349631	12	2.1	12	100	0	50	72	0	28	0	0.86
351920--352130	33	6.2	33	77	15	209	46	18	20	13	1.83
351934--352148	19	12.4	19	76	20	238	46	18	20	14	1.83
351934--352148	71	3.1	71	78	13	225	46	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351962--352148	52	3.6	52	96	1	331	47	17	21	14	1.83
352144--352260	53	2.2	53	96	1	218	13	23	17	45	1.84
352163--352260	19	5.4	19	84	13	143	14	22	17	45	1.84
352363--352399	14	2.6	14	91	0	65	45	21	0	32	1.52
353082--353282	101	2.0	101	98	1	388	45	21	7	25	1.78
354077--354213	19	7.8	19	72	15	116	45	21	22	10	1.83
354079--354208	33	3.8	34	85	9	167	45	21	22	10	1.82
354209--354251	19	2.3	19	96	4	79	6	16	32	44	1.74
354224--354316	32	2.8	33	87	6	127	10	19	25	44	1.83
354209--354284	19	4.4	18	73	20	63	9	18	27	44	1.80
354413--354601	91	2.1	89	94	3	324	44	19	13	22	1.85
354570--354631	31	2.0	31	96	0	115	38	12	14	33	1.84
354574--354627	17	3.4	17	72	15	60	40	14	14	29	1.86
356300--356375	19	4.3	19	77	16	81	9	21	23	46	1.80
356327--356397	19	3.7	19	86	1	88	11	25	19	43	1.84
356895--357067	20	8.6	20	82	3	197	20	19	25	34	1.96
357035--357130	20	4.7	19	78	15	77	16	18	23	40	1.91
357053--357130	21	3.8	21	77	17	67	17	19	21	41	1.91
365338--365385	21	2.3	21	92	0	78	39	35	20	4	1.72
373516--374232	149	4.9	146	85	7	906	24	21	34	19	1.96
373257--374229	284	3.4	284	82	8	992	23	21	34	20	1.96
373294--374236	431	2.2	426	84	5	1225	23	21	34	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373967--374235	147	1.8	147	93	0	466	23	20	35	20	1.96
384143--384172	14	2.1	14	93	0	51	30	6	13	50	1.67
384884--384953	32	2.2	32	82	10	81	50	0	7	42	1.30
384976--385064	42	2.1	43	91	2	144	49	3	2	44	1.31
385129--385275	79	1.9	79	91	0	240	36	9	13	40	1.77
385272--385311	16	2.4	17	83	8	55	35	0	0	65	0.93
389738--389790	16	2.7	21	64	29	53	47	9	13	30	1.74
391798--391845	22	2.2	22	85	3	62	54	14	16	14	1.72
392024--392087	29	2.1	31	82	5	78	42	3	4	50	1.39
393219--393310	8	11.5	8	74	17	77	15	38	23	22	1.92
393214--393248	13	2.7	13	100	0	70	17	48	22	11	1.79
393252--393300	15	3.1	15	88	5	71	12	34	24	28	1.91
393252--393290	7	5.3	7	88	11	60	12	33	25	28	1.93
393567--393607	18	2.3	18	86	0	55	51	2	17	29	1.58
394479--394561	23	3.6	23	82	8	96	24	16	20	38	1.93
394494--394568	24	3.2	24	88	1	116	25	17	21	36	1.95
396719--396754	17	2.1	18	94	5	65	19	47	22	11	1.80
398074--398109	18	2.0	18	88	0	54	52	0	16	30	1.44
399254--399336	23	3.6	23	82	8	96	24	16	20	38	1.93
399269--399343	24	3.2	24	88	1	116	25	17	21	36	1.95
402178--402230	16	2.7	21	64	29	53	47	9	13	30	1.74
404247--404294	22	2.2	22	85	3	62	54	14	16	14	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404476--404539	29	2.1	31	82	5	78	42	3	4	50	1.39
407609--407652	23	2.0	22	82	8	54	34	0	4	61	1.16
411123--411168	18	2.6	18	92	0	74	19	50	19	10	1.77
411163--411202	8	5.5	8	77	22	52	15	40	25	20	1.90
411145--411202	13	4.3	13	84	4	71	17	41	22	18	1.90
411176--411223	15	2.7	18	84	15	57	20	31	25	22	1.98
412513--412548	18	2.0	18	94	0	63	55	0	13	30	1.39
413639--413770	48	2.8	48	76	13	137	22	16	18	42	1.89
413656--413770	24	4.8	24	86	6	153	23	17	18	40	1.91
413707--413779	24	3.0	24	86	4	76	21	16	17	43	1.87
415942--415987	18	2.6	18	92	0	74	19	50	19	10	1.77
415982--416021	8	5.5	8	77	22	52	15	40	25	20	1.90
415964--416021	13	4.3	13	84	4	71	17	41	22	18	1.90
415995--416042	15	2.7	18	84	15	57	20	31	25	22	1.98
417331--417366	18	2.0	18	94	0	63	55	0	13	30	1.39
418458--418589	48	2.8	48	76	13	137	22	16	18	42	1.89
418475--418589	24	4.8	24	86	6	153	23	17	18	40	1.91
418526--418598	24	3.0	24	86	4	76	21	16	17	43	1.87
419713--419778	23	2.9	23	68	18	57	43	1	0	54	1.09
419958--419999	22	1.9	22	90	0	66	52	0	4	42	1.22
428382--428406	12	2.1	12	100	0	50	92	0	8	0	0.40
431374--431492	36	3.3	36	90	0	193	35	25	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431897--432338	51	8.5	51	85	6	552	33	17	23	25	1.96
431909--432308	208	1.9	206	91	4	653	34	18	24	23	1.96
432277--432625	108	3.2	108	91	3	515	29	15	28	27	1.96
432310--432625	55	5.8	55	86	4	444	28	14	29	28	1.95
432257--432625	55	6.7	55	85	6	443	28	14	28	27	1.96
434314--434698	190	2.0	192	94	4	681	21	15	34	28	1.94
439006--439041	18	2.1	18	89	5	56	33	11	0	55	1.35
440547--440616	32	2.2	32	82	10	81	50	0	7	42	1.30
440639--440727	42	2.1	41	93	2	133	49	2	2	46	1.26
440792--440938	79	1.9	79	88	0	222	36	9	12	41	1.75
440933--440976	16	2.6	17	85	7	63	31	0	0	68	0.90
444089--444544	232	2.0	227	97	2	867	34	17	24	23	1.96
445175--445227	16	2.7	21	64	29	53	47	9	13	30	1.74
447434--447522	42	2.1	41	93	2	133	49	2	2	46	1.26
447587--447746	80	2.0	78	90	2	248	34	8	12	45	1.72
449524--449572	22	2.2	22	96	0	89	34	44	6	14	1.70
456073--456322	55	4.5	54	82	7	295	26	26	22	25	2.00
456076--456322	27	8.8	28	66	19	113	25	26	21	25	2.00
456076--456289	115	1.9	116	93	1	376	26	25	22	25	2.00
457414--457451	20	1.9	20	89	10	60	42	0	15	42	1.47
459660--459731	36	2.0	36	91	0	117	23	8	18	50	1.74
459955--459986	16	2.0	16	93	0	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460980--461064	11	7.8	11	69	11	50	45	4	2	47	1.36
460980--461064	32	2.6	32	80	12	84	45	4	2	47	1.36
462691--462722	6	5.3	6	92	0	55	18	15	65	0	1.27
464089--464153	29	2.2	31	83	5	80	41	3	4	50	1.38
464561--464609	22	2.3	22	85	3	64	6	24	30	38	1.80
467100--467184	31	2.7	32	80	7	86	45	14	1	38	1.52
467112--467184	32	2.3	31	81	6	85	46	16	0	36	1.47
469796--469824	12	2.3	13	94	5	51	55	0	0	44	0.99
470040--470151	35	3.2	35	88	2	163	42	19	0	36	1.58
471197--471309	35	3.2	34	88	5	163	33	0	23	42	1.60

Tables:   1   2   3   4