genome.fa.s6071.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006071.1 Hibiscus syriacus cultivar Beakdansim tig00014370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  851632

Tables:   1   2   3   4   

This is table  3  of  4  ( 405 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472695--472720	2	13.0	2	100	0	52	50	0	0	50	1.00
473113--473154	2	21.0	2	100	0	84	50	0	0	50	1.00
477181--477225	22	2.0	22	82	0	54	60	2	0	37	1.09
477951--477996	25	1.9	23	91	8	74	41	0	4	54	1.20
477951--478010	28	2.4	24	83	13	68	43	0	3	53	1.17
479187--479224	20	1.9	20	94	0	67	31	23	18	26	1.97
484330--484838	84	6.0	84	74	3	396	29	18	20	32	1.96
484423--484838	168	2.5	168	85	2	530	29	18	19	31	1.96
485153--485255	43	2.4	44	85	4	147	21	15	33	30	1.94
485485--485630	43	3.4	43	88	0	202	23	15	30	30	1.95
486182--486256	32	2.3	32	88	0	105	33	24	10	32	1.89
486397--486464	23	3.0	23	72	12	68	42	2	14	39	1.61
487301--487340	15	2.5	16	84	12	55	2	15	7	75	1.14
487716--487757	20	2.1	20	95	0	75	14	35	19	30	1.91
490767--490816	22	2.4	20	86	6	64	58	6	10	26	1.54
494037--494067	5	6.2	5	92	0	53	38	0	3	58	1.15
494152--494178	14	1.9	14	100	0	54	55	0	14	29	1.40
496896--496932	18	2.1	18	89	0	56	27	8	27	37	1.84
497402--497462	28	2.2	28	80	13	65	31	9	11	47	1.72
502506--502577	36	2.0	36	97	0	135	52	15	11	20	1.72
502634--502675	20	2.2	19	91	4	66	78	2	0	19	0.86
502637--502679	11	4.1	11	82	11	54	74	2	0	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505463--505506	22	2.0	22	100	0	88	50	9	18	22	1.75
507617--507709	29	3.1	29	67	17	82	37	8	15	38	1.78
515980--516300	160	2.0	160	100	0	642	33	19	19	28	1.96
516579--516653	39	1.9	39	100	0	150	30	20	18	30	1.96
517239--517280	5	8.4	5	100	0	84	38	0	42	19	1.51
520110--520146	6	6.5	6	96	3	60	29	54	16	0	1.43
523703--523750	20	2.4	20	92	0	78	31	20	16	31	1.95
523743--523872	37	3.4	37	63	14	93	39	20	14	25	1.91
523655--523904	77	3.2	77	89	0	365	38	20	14	28	1.91
523780--523826	20	2.3	20	85	0	58	36	23	12	27	1.91
523857--523945	20	4.4	20	88	0	115	30	23	17	28	1.97
524003--524154	20	7.6	20	70	11	114	22	11	23	42	1.86
524018--524136	41	2.9	42	81	9	147	21	10	23	43	1.84
524003--524154	40	3.8	41	76	13	145	22	11	23	42	1.86
524007--524194	101	1.9	100	80	8	220	23	11	24	40	1.87
528811--528879	34	2.0	34	100	0	138	34	36	5	23	1.79
530185--530241	26	2.2	26	96	0	105	26	22	22	28	1.99
535817--535954	69	2.0	69	100	0	276	40	4	11	43	1.61
538275--538300	2	13.0	2	100	0	52	50	0	0	50	1.00
549086--549125	2	20.0	2	94	0	71	52	0	0	47	1.00
553037--553092	23	2.4	22	80	14	58	39	5	3	51	1.42
561992--562016	2	12.5	2	100	0	50	52	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562544--562689	51	2.9	50	74	8	134	0	42	0	56	1.09
562573--562688	33	3.4	33	87	3	160	0	43	0	55	1.05
562592--562681	15	5.6	15	71	14	72	1	44	0	54	1.07
562537--562689	18	9.1	18	72	14	103	0	42	0	56	1.09
562573--562703	33	3.9	32	84	8	129	0	42	1	54	1.14
579685--579901	41	5.3	41	71	12	142	35	19	18	26	1.95
579621--579818	21	9.6	21	70	10	86	29	21	17	31	1.96
579685--579919	20	11.6	20	74	10	138	34	20	18	26	1.96
579774--579927	61	2.5	60	76	10	168	34	20	18	26	1.96
580478--580569	19	5.4	18	72	24	83	10	20	19	48	1.78
580478--580579	33	3.1	33	95	0	177	10	20	20	48	1.79
580572--580610	20	2.0	20	94	0	69	12	10	30	46	1.75
580706--580743	14	2.7	14	87	0	58	47	15	0	36	1.46
582154--582246	42	2.2	42	86	3	134	21	15	43	20	1.88
582182--582242	21	2.9	21	73	9	70	21	13	42	22	1.87
582606--582673	20	3.4	20	85	4	93	39	23	23	13	1.90
582662--582720	14	3.9	14	76	20	64	49	23	16	10	1.77
582645--582725	33	2.4	33	91	2	135	48	22	19	9	1.78
582645--582736	33	2.8	33	88	5	123	47	23	18	9	1.78
582732--582795	19	3.6	19	72	20	66	17	20	17	45	1.86
582780--582823	20	2.2	20	88	4	63	18	25	20	36	1.95
583369--583415	18	2.7	18	90	3	78	14	12	44	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584594--584652	20	3.0	20	87	0	73	44	22	18	15	1.87
584896--584939	22	2.0	22	95	0	79	18	15	45	20	1.85
585106--585243	41	3.4	41	79	2	170	23	15	25	36	1.93
585126--585239	20	5.7	20	79	6	113	23	15	27	33	1.95
585229--585280	20	2.5	20	84	3	59	19	23	19	38	1.93
585133--585261	41	3.2	41	81	5	120	24	16	25	34	1.95
585270--585322	21	2.5	22	81	6	74	33	18	26	20	1.96
589638--589674	17	2.2	18	85	9	51	13	8	10	67	1.41
600224--600362	29	4.7	30	66	12	90	42	0	20	36	1.57
600207--600380	58	3.0	60	80	8	189	41	1	20	36	1.60
603051--603156	28	3.7	29	83	5	117	37	11	8	42	1.71
603048--603157	57	1.9	59	87	7	163	37	11	8	42	1.71
603051--603125	14	5.3	14	69	15	64	34	10	10	44	1.74
603048--603164	29	4.0	29	84	4	146	35	11	7	44	1.70
613688--613744	21	2.8	20	83	2	69	45	7	5	42	1.53
617548--617581	17	1.9	18	94	5	61	64	8	0	26	1.22
625847--625913	22	3.0	22	97	0	125	26	28	25	19	1.99
626551--626701	68	2.2	67	87	4	214	19	27	25	27	1.99
626681--626723	21	2.0	21	86	0	59	16	25	27	30	1.97
626556--626723	68	2.5	68	84	4	189	19	28	23	29	1.98
632724--632790	22	3.0	22	100	0	134	26	26	26	19	1.99
633424--633574	68	2.2	68	89	1	223	18	27	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633554--633596	21	2.0	21	81	0	50	18	23	27	30	1.98
637636--637794	21	7.7	20	75	12	135	22	19	22	35	1.96
637630--637794	42	4.0	41	87	4	217	21	20	22	35	1.96
638627--638693	19	3.3	19	80	15	89	32	16	22	28	1.95
638621--638707	42	2.1	40	91	4	138	32	17	22	27	1.96
638635--638701	19	3.3	19	80	12	80	37	17	20	23	1.94
638672--638785	57	2.0	57	94	0	201	28	18	27	26	1.98
639104--639568	229	2.0	226	85	3	610	40	12	13	33	1.82
639421--639692	109	2.5	107	82	3	312	38	13	12	35	1.82
639897--639932	17	2.1	17	94	0	63	38	5	8	47	1.57
640240--640399	75	2.1	75	80	4	171	34	11	8	45	1.72
640410--640446	17	2.1	19	85	10	51	24	10	0	64	1.25
640263--640453	75	2.5	74	77	12	194	31	12	8	47	1.70
640464--640536	23	3.2	23	86	0	92	34	9	15	41	1.79
640511--640693	75	2.4	75	87	0	267	31	14	11	42	1.82
641463--641522	23	2.6	23	86	0	84	40	13	11	35	1.81
641509--641691	75	2.5	75	83	2	235	34	14	10	39	1.81
642272--642331	30	2.0	30	100	0	120	26	26	20	26	1.99
648392--648427	17	2.1	17	94	0	63	61	2	0	36	1.11
668305--668340	2	18.0	2	100	0	72	50	0	0	50	1.00
672879--672941	23	2.7	23	82	0	81	15	23	26	33	1.95
687664--687811	60	2.5	60	72	8	140	33	13	18	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691756--691830	28	2.7	28	80	0	87	14	22	21	41	1.89
698938--699008	35	2.0	35	86	2	97	52	28	2	16	1.58
702959--703018	22	2.6	24	82	15	81	55	0	0	45	0.99
704763--704801	14	2.8	14	84	0	51	35	28	12	23	1.91
709238--709511	141	1.9	145	96	3	520	31	13	24	31	1.93
711491--711762	136	2.0	135	94	5	478	23	20	22	34	1.97
725021--725055	18	1.9	18	100	0	70	34	17	11	37	1.85
754413--754451	13	2.9	14	84	7	62	38	12	0	48	1.42
756765--756794	2	15.0	2	100	0	60	50	0	0	50	1.00
757045--757086	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3   4