genome.fa.s6071.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006071.1 Hibiscus syriacus cultivar Beakdansim tig00014370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  851632

Tables:   1   2   3   4   

This is table  4  of  4  ( 405 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758626--758654	15	2.0	15	93	6	51	44	0	0	55	0.99
768286--768324	19	2.0	20	85	14	55	43	0	0	56	0.99
768744--768782	20	2.0	19	85	14	53	46	0	2	51	1.14
771194--771252	23	2.6	23	97	2	111	28	6	30	33	1.83
775336--775360	12	2.1	12	100	0	50	16	16	8	60	1.58
779163--779192	16	1.9	15	93	6	51	76	0	3	20	0.92
780851--781090	84	2.8	84	82	1	275	24	20	23	32	1.98
781166--781439	36	7.9	36	68	15	112	40	13	19	27	1.88
781167--781439	102	2.7	101	79	2	314	40	13	19	27	1.88
781368--781439	36	2.0	36	94	0	126	41	12	20	25	1.87
782652--782740	32	2.8	32	89	1	133	35	21	13	29	1.91
783680--783817	69	2.0	69	92	2	233	25	14	22	37	1.92
786916--786954	21	1.9	20	89	5	60	76	2	2	17	1.01
796032--796129	19	5.1	19	76	16	78	13	28	27	30	1.94
796030--796104	29	2.5	30	89	8	118	17	26	26	29	1.97
796031--796129	10	10.3	9	77	12	81	14	28	27	30	1.95
796126--796168	22	2.0	22	100	0	86	18	48	23	9	1.76
797051--797174	63	2.0	63	82	6	153	16	28	29	25	1.97
809227--809278	20	2.6	20	96	0	95	38	26	13	21	1.90
809268--809366	21	4.8	20	72	6	72	36	23	19	21	1.95
809333--809526	20	9.6	20	81	5	212	35	25	19	19	1.95
809333--809526	60	3.2	60	82	0	244	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809908--809978	33	2.2	33	92	0	115	11	22	18	47	1.80
810099--810153	14	3.6	14	73	21	56	40	23	27	9	1.85
810099--810169	33	2.2	33	92	0	115	42	25	23	8	1.82
810165--810262	19	5.7	19	70	22	81	10	24	22	42	1.84
810187--810276	14	5.7	14	74	23	81	8	25	23	42	1.83
810170--810284	33	3.5	33	95	0	212	9	24	20	45	1.81
812480--812515	14	2.6	14	95	0	63	33	0	22	44	1.53
812621--812722	19	5.6	19	84	13	151	44	17	23	14	1.86
812729--813056	33	9.5	33	78	15	217	14	20	18	46	1.83
812751--813056	19	17.4	19	79	16	356	14	19	18	47	1.82
812751--812990	71	3.4	71	83	11	355	15	20	17	47	1.83
812751--813028	52	5.2	52	88	7	327	14	20	17	47	1.82
815556--815602	24	2.0	24	87	8	69	38	21	14	25	1.92
816273--816641	20	18.5	20	86	4	458	20	18	26	34	1.96
817835--817860	3	8.7	3	100	0	52	30	0	0	69	0.89
819318--819364	24	1.9	25	86	4	69	38	10	21	29	1.87
819371--819398	14	2.0	14	100	0	56	42	0	7	50	1.30
821689--821715	13	2.1	13	100	0	54	7	25	14	51	1.68
826952--826977	12	2.2	12	100	0	52	15	42	0	42	1.47
830173--830233	31	2.0	31	100	0	122	26	16	9	47	1.77
843118--843182	34	1.9	34	100	0	130	53	13	7	24	1.66
845210--845334	43	2.9	43	82	0	142	37	21	10	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851394--851432	21	1.9	19	85	10	51	46	0	5	48	1.24

Tables:   1   2   3   4

The End!