genome.fa.s6400.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006400.1 Hibiscus syriacus cultivar Beakdansim tig00015426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1412076

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 869 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195028--195052	12	2.1	12	100	0	50	0	28	0	72	0.86
195227--195273	24	2.0	24	87	8	69	38	21	14	25	1.92
195955--196204	20	12.5	20	86	1	250	20	18	24	37	1.94
196191--196273	21	4.0	21	73	6	78	25	16	24	33	1.96
196171--196269	42	2.4	43	77	11	100	21	18	23	37	1.94
197268--197297	13	2.3	13	94	0	51	13	26	46	13	1.80
197274--197319	18	2.6	18	92	0	74	8	21	54	15	1.68
201563--201592	14	2.1	15	93	6	53	40	10	0	50	1.36
202585--202617	15	2.2	15	94	0	57	6	15	69	9	1.34
204076--204114	19	2.1	19	100	0	78	41	25	5	28	1.77
205864--205908	19	2.2	22	88	11	69	53	0	2	44	1.13
205864--205917	19	2.6	21	82	11	67	51	1	1	44	1.22
210134--210220	35	2.5	34	80	12	97	54	10	8	27	1.62
211366--211393	2	14.0	2	100	0	56	50	0	0	50	1.00
214829--214876	25	1.9	25	86	0	69	45	6	25	22	1.75
225082--225132	20	2.5	20	96	0	93	23	13	23	39	1.91
234694--234727	2	17.0	2	100	0	68	50	0	0	50	1.00
234777--234852	17	4.7	16	72	19	68	46	2	3	47	1.35
234754--234867	49	2.3	49	89	3	158	44	2	4	48	1.36
234844--234879	2	18.0	2	100	0	72	50	0	0	50	1.00
234795--234936	57	2.5	56	82	10	153	45	2	4	47	1.34
235434--235582	77	1.9	79	80	5	178	37	10	6	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239190--239320	41	3.2	41	76	5	129	42	25	3	29	1.70
239185--239291	14	7.8	14	66	11	51	44	24	1	28	1.64
239253--239310	21	2.8	21	77	12	57	44	22	1	31	1.63
240585--240638	18	2.7	20	75	16	58	31	27	12	27	1.93
240711--240756	20	2.3	20	80	0	56	36	10	19	32	1.87
248839--248919	26	2.9	27	87	10	110	49	0	0	50	1.00
248852--248897	21	2.1	22	88	4	67	50	0	0	50	1.00
248839--248919	29	2.9	28	87	8	112	49	0	0	50	1.00
249078--249126	23	2.1	23	84	0	62	51	0	2	46	1.12
251359--251396	16	2.3	17	90	4	60	28	0	0	71	0.87
255096--255120	7	3.6	7	100	0	50	60	0	0	40	0.97
256522--256565	23	1.9	23	81	9	54	50	11	0	38	1.39
256527--256618	35	2.6	36	83	8	109	45	8	1	44	1.41
256582--256669	29	3.0	29	86	3	115	40	6	5	46	1.54
256615--256976	37	10.1	34	75	18	196	42	6	4	46	1.50
256640--256978	74	4.6	73	81	12	333	42	6	4	46	1.49
256714--256980	37	7.2	38	77	11	270	43	5	4	46	1.48
257546--258616	84	12.9	83	78	6	1062	23	20	25	30	1.99
257543--258635	249	4.4	247	83	5	1077	23	20	25	30	1.99
257546--258657	164	6.7	163	83	5	1149	23	20	25	30	1.99
262075--262122	19	2.5	19	93	0	78	68	12	8	10	1.39
265204--265249	2	23.5	2	95	4	85	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265230--265691	37	13.2	34	72	19	133	44	6	3	45	1.48
265249--265342	35	2.6	36	85	8	120	45	8	1	44	1.41
265306--265393	29	3.0	29	85	3	106	40	7	5	45	1.57
265302--265680	105	3.6	103	77	17	275	43	6	4	45	1.50
265450--265691	37	6.6	37	79	10	259	45	6	4	43	1.50
265374--265703	74	4.5	73	82	10	324	43	6	4	45	1.50
266009--266033	3	8.3	3	100	0	50	68	0	0	32	0.90
270762--270818	28	2.0	28	82	0	69	33	12	15	38	1.85
271671--271718	2	24.0	2	100	0	96	50	0	0	50	1.00
273253--273281	13	2.2	13	100	0	58	79	6	6	6	1.06
273261--273313	13	3.9	13	80	5	52	75	3	3	16	1.10
273383--273747	36	10.2	36	78	14	323	46	9	1	43	1.44
273397--273470	25	3.0	25	88	7	80	47	8	0	44	1.32
273411--273470	23	2.5	24	91	5	95	46	8	0	45	1.33
273439--273652	109	2.0	107	90	4	340	46	9	1	42	1.45
274486--275238	186	4.0	186	87	5	994	24	16	21	37	1.93
274634--275220	200	3.0	199	89	6	893	23	16	22	38	1.93
276628--276907	99	2.8	99	90	4	411	31	19	17	31	1.95
280809--280861	21	2.4	23	84	6	65	45	13	0	41	1.43
280832--281009	36	4.9	36	84	10	220	44	9	1	43	1.46
280837--281066	36	6.2	37	76	13	117	44	9	2	43	1.49
281116--281141	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285252--285500	5	49.8	5	100	0	498	60	39	0	0	0.97
287796--287873	28	2.8	28	94	0	129	30	16	10	42	1.82
291837--291873	15	2.5	15	95	0	65	8	70	16	5	1.30
294990--295043	20	2.7	20	94	0	90	37	7	29	25	1.83
298827--298895	2	35.0	2	97	2	131	50	0	0	49	1.00
299099--299168	31	2.2	32	82	10	90	44	1	8	45	1.43
301204--301264	25	2.4	25	84	10	88	31	21	13	34	1.91
305476--305509	15	2.3	15	90	5	52	47	2	11	38	1.55
307644--307682	17	2.4	17	87	12	55	82	0	2	15	0.79
307647--307685	14	2.8	14	84	7	53	82	0	2	15	0.79
315734--315773	20	2.0	21	85	5	55	37	5	0	57	1.21
319330--319397	31	2.3	30	82	12	79	51	10	13	25	1.72
319622--319648	2	13.5	2	100	0	54	51	0	0	48	1.00
319862--319997	29	4.7	29	71	13	100	34	3	25	36	1.74
320971--321042	32	2.2	33	80	14	96	31	11	13	43	1.80
321591--321736	75	1.9	75	88	0	220	26	23	11	39	1.89
322018--322049	2	16.5	2	93	6	57	46	0	0	53	1.00
324039--324075	16	2.4	16	83	16	51	27	2	18	51	1.60
324175--324316	23	6.1	23	81	4	115	21	25	21	31	1.98
324170--324251	24	3.5	24	83	1	103	23	26	20	29	1.99
324254--324316	23	2.7	23	95	0	117	20	23	22	33	1.97
324315--324360	24	2.0	24	86	4	67	19	21	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330357--330454	23	4.2	23	82	7	108	20	24	20	34	1.96
330357--330467	23	4.8	23	78	8	82	19	24	22	33	1.97
335403--335435	12	2.8	12	95	0	57	39	42	12	6	1.67
336151--336226	30	2.6	30	85	4	102	13	32	26	27	1.93
339197--339234	19	2.1	18	85	14	51	60	0	13	26	1.33
339830--339889	30	2.0	29	84	12	77	68	5	15	11	1.36
341680--341733	27	2.0	27	96	3	101	33	3	11	51	1.55
341936--342021	29	2.9	29	75	16	86	36	23	1	39	1.62
342268--342382	60	1.9	60	80	0	131	41	6	18	33	1.77
343477--343501	12	2.1	12	100	0	50	24	60	0	16	1.36
343772--343822	16	3.6	16	65	29	51	35	23	25	15	1.94
343766--343843	26	3.0	26	100	0	156	34	23	26	15	1.94
344870--344984	60	1.9	60	81	0	140	40	6	20	33	1.77
350077--350124	14	2.9	17	76	20	57	39	8	4	47	1.53
354931--355003	36	2.0	38	86	5	105	47	1	2	47	1.24
355024--355104	2	41.0	2	97	2	155	49	0	0	50	1.00
355507--355554	15	3.1	15	87	3	69	10	8	35	45	1.68
355761--355821	32	1.9	32	82	0	77	40	8	13	37	1.74
356000--356046	16	2.9	16	78	12	51	17	6	21	55	1.64
358106--358180	33	2.3	33	88	0	105	24	29	33	13	1.93
358144--358195	23	2.3	23	89	0	77	23	25	40	11	1.88
358151--358203	23	2.3	23	86	0	79	26	24	37	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358167--358250	33	2.5	33	100	0	168	23	25	44	7	1.79
358125--358236	56	2.0	56	87	0	161	25	25	38	11	1.89
358254--358309	29	1.9	29	92	0	94	21	30	35	12	1.90
358368--358453	29	3.0	29	91	0	127	24	30	31	13	1.94
360741--360770	2	15.0	2	100	0	60	0	50	0	50	1.00
370717--370747	16	2.0	16	93	6	55	25	0	12	61	1.32
372538--372562	10	2.5	10	100	0	50	8	32	0	60	1.26
373830--374622	136	5.8	136	78	10	836	35	17	21	25	1.95
374252--374347	35	2.6	36	87	11	124	45	13	22	17	1.84
373880--374758	411	2.1	411	94	0	1524	37	17	21	24	1.94

Tables:   1   2   3   4   5   6   7   8