Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006400.1 Hibiscus syriacus cultivar Beakdansim tig00015426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1412076

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 869 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1343053--1343493
129
3.4
129
91
0
686
24
20
29
25
1.99
1343984--1344018
15
2.3
15
95
0
61
40
2
20
37
1.67
1344185--1344306
62
2.0
61
85
4
165
41
13
13
31
1.83
1344528--1344820
64
4.5
63
94
4
446
46
12
11
30
1.77
1344547--1344810
67
4.0
67
95
4
482
44
12
11
31
1.78
1344782--1344837
26
2.1
27
90
3
87
44
16
7
32
1.74
1344772--1344838
27
2.5
28
83
11
86
43
14
7
34
1.74
1344733--1345122
140
2.7
141
90
3
588
42
15
11
30
1.81
1345064--1345210
28
5.5
25
78
15
102
50
14
8
27
1.71
1345065--1345202
29
4.9
29
82
8
144
48
15
7
28
1.73
1345065--1345202
57
2.5
57
79
10
144
48
15
7
28
1.73
1345440--1345553
34
3.2
35
76
8
106
37
10
21
30
1.87
1345451--1345569
34
3.4
35
77
8
91
36
12
21
30
1.90
1345451--1345581
35
3.7
35
77
9
106
34
12
19
32
1.90
1345520--1345753
104
2.2
105
82
8
273
36
13
19
30
1.90
1346217--1346243
14
1.9
14
100
0
54
22
0
25
51
1.48
1353553--1353613
3
21.0
3
77
12
65
67
1
3
27
1.16
1355948--1356055
30
3.6
30
84
2
137
40
9
11
38
1.73
1356451--1356482
17
1.9
17
93
6
57
40
12
0
46
1.42
1361817--1361855
15
2.6
15
91
0
60
51
7
10
30
1.64
1372204--1372292
40
2.2
40
97
0
169
41
8
6
42
1.63
1374685--1374728
18
2.4
18
92
0
70
27
9
34
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1399644--1399715
25
2.9
25
89
0
108
30
30
22
16
1.96
1405026--1405071
22
2.0
23
84
12
60
43
10
8
36
1.71
1407038--1407169
64
2.0
65
87
7
189
34
9
25
31
1.87
1407239--1407289
22
2.3
22
96
0
93
35
11
13
39
1.82
1408433--1408488
16
3.5
15
79
15
60
44
1
1
51
1.22
1409602--1409628
2
13.5
2
100
0
54
48
0
0
51
1.00
1410642--1410675
16
2.1
17
88
5
52
38
2
17
41
1.65

Tables:   1   2   3   4   5   6   7   8

The End!