genome.fa.s6400.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006400.1 Hibiscus syriacus cultivar Beakdansim tig00015426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1412076

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 869 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945972--946080	58	1.9	57	94	1	191	11	19	22	47	1.80
945972--946134	58	2.9	57	81	9	176	11	20	22	45	1.83
948138--948260	42	2.9	42	80	2	122	22	36	17	22	1.95
948194--948260	21	3.2	21	66	6	55	23	35	20	19	1.95
949613--949648	14	2.6	14	95	0	63	30	0	25	44	1.54
949828--949978	19	8.7	19	64	21	80	15	22	20	41	1.89
949832--949958	33	3.9	32	87	8	193	14	22	19	42	1.88
949825--949957	66	2.0	66	97	0	248	16	22	19	41	1.90
952430--952483	24	2.2	24	90	0	81	38	20	16	24	1.92
953510--953560	20	2.5	20	93	0	84	35	25	21	17	1.95
953510--953567	20	2.9	20	87	5	82	39	22	20	17	1.92
953591--953644	14	3.5	14	73	22	54	12	18	20	48	1.81
953573--953643	33	2.2	33	86	0	97	21	18	21	39	1.93
953586--953701	19	6.6	19	74	15	108	15	22	18	43	1.88
953586--953667	33	2.5	33	91	0	128	15	21	18	43	1.87
954192--954249	20	2.9	20	94	0	98	37	22	22	17	1.93
954272--954324	14	3.5	14	76	18	61	11	20	20	47	1.81
954267--954383	32	3.4	32	85	7	126	15	22	17	44	1.86
954267--954400	19	7.6	19	78	15	146	14	23	18	43	1.87
954279--954400	52	2.3	52	84	8	156	14	22	18	44	1.86
956392--956458	19	3.5	19	81	4	80	38	22	23	14	1.92
956392--956447	20	2.9	19	84	5	76	37	21	25	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956431--956508	31	2.4	32	93	4	131	46	24	19	10	1.81
956442--956496	18	3.2	18	69	30	57	50	21	16	10	1.75
956431--956519	32	2.7	31	86	5	108	46	25	17	10	1.80
956515--956610	19	5.6	17	72	21	78	11	19	22	45	1.82
956537--956594	14	3.9	14	79	16	71	8	17	25	48	1.75
956520--956610	32	2.8	33	94	3	166	10	18	23	47	1.80
956595--956648	20	2.8	19	86	5	72	16	24	24	35	1.95
956583--956648	19	3.4	19	81	4	78	15	22	24	37	1.92
957119--957163	18	2.5	18	85	0	63	11	15	46	26	1.79
958686--958729	22	2.0	22	95	0	79	18	15	45	20	1.85
958917--958968	20	2.6	20	90	0	77	25	17	28	28	1.97
958936--959013	41	1.9	41	86	5	113	24	15	21	38	1.92
958999--959091	20	4.5	21	78	4	100	17	24	18	39	1.91
958999--959091	41	2.3	41	100	0	186	17	24	18	39	1.91
960165--960195	16	1.9	16	100	0	62	51	19	9	19	1.74
960607--960657	23	2.2	23	100	0	102	29	7	15	47	1.74
960675--960715	22	1.9	21	90	5	64	24	0	4	70	1.06
961072--961297	124	1.8	121	82	6	285	48	9	11	29	1.72
962045--962075	10	3.0	10	90	9	53	3	19	0	77	0.90
962045--962074	11	2.8	11	95	5	53	3	16	0	80	0.85
964990--965023	16	2.1	16	88	0	50	47	2	0	50	1.16
964813--965189	191	2.0	195	91	5	615	45	7	3	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966343--966416	29	2.5	31	84	4	89	28	10	13	47	1.76
966809--966912	39	2.7	39	72	14	97	38	16	2	42	1.63
966949--966999	26	2.0	26	81	11	61	37	0	1	60	1.08
967178--967236	21	2.6	22	80	15	75	42	6	0	50	1.28
967182--967250	25	2.6	27	76	21	74	42	5	0	52	1.25
967178--967251	27	3.1	24	83	11	73	43	5	0	51	1.24
967236--967291	23	2.7	20	82	15	69	48	0	0	51	1.00
967236--967289	22	2.5	22	85	11	76	50	0	0	50	1.00
967240--967289	23	2.3	23	86	6	77	52	0	0	48	1.00
967240--967299	21	2.7	23	80	12	72	50	0	0	50	1.00
974416--974447	2	16.0	2	100	0	64	50	0	0	50	1.00
974403--974446	10	4.3	11	85	11	58	45	0	0	54	0.99
982791--982846	29	1.9	29	92	0	94	33	17	8	39	1.81
983215--983385	60	2.9	59	79	8	186	46	3	15	33	1.63
989838--989897	23	2.8	22	80	7	70	20	35	25	20	1.96
991505--991532	12	2.3	12	100	0	56	39	17	25	17	1.92
992160--992192	16	2.1	16	94	0	57	36	0	15	48	1.45
992732--992779	21	2.3	21	100	0	96	18	33	27	20	1.96
994641--994694	23	2.3	23	87	0	72	35	25	14	24	1.94
1002077--1002143	23	2.9	23	88	0	98	32	25	25	16	1.96
1007498--1007564	23	2.9	23	86	0	98	32	25	25	16	1.96
1011461--1011529	32	2.2	32	81	0	75	36	14	10	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011475--1011535	32	1.9	32	89	0	95	32	16	9	40	1.81
1012890--1012938	17	2.9	17	90	0	80	44	2	0	53	1.12
1013459--1013529	2	35.5	2	100	0	142	49	0	0	50	1.00
1018477--1018524	14	3.4	14	74	5	51	41	2	4	52	1.32
1020085--1020167	42	2.0	42	85	0	112	32	31	9	26	1.88
1022176--1022221	21	2.2	21	88	0	65	30	28	26	15	1.96
1022248--1022292	22	2.0	22	86	4	63	31	33	26	8	1.87
1023595--1023722	31	4.1	31	80	9	152	26	18	21	33	1.96
1023681--1023777	30	3.2	30	88	1	113	22	20	24	31	1.98
1023708--1023780	30	2.4	30	95	0	128	24	20	24	30	1.99
1027210--1027255	21	2.2	21	84	7	58	32	26	26	15	1.95
1027282--1027326	22	2.0	22	86	4	63	31	33	26	8	1.87
1028629--1028756	31	4.1	32	79	7	138	27	17	20	35	1.95
1033542--1033588	24	1.9	25	86	4	69	68	4	2	25	1.19
1036651--1036892	122	2.0	120	93	1	412	26	15	14	42	1.86
1043896--1043942	20	2.3	20	96	0	85	48	2	2	46	1.25
1046666--1046734	36	1.9	36	90	0	111	5	13	27	53	1.62
1050024--1050061	20	1.9	20	84	10	51	47	7	0	44	1.32
1052838--1052888	26	2.0	26	84	0	66	25	27	11	35	1.91
1054779--1054816	15	2.5	15	95	0	67	28	23	10	36	1.88
1055790--1055814	13	1.9	13	100	0	50	72	12	0	16	1.13
1056712--1056751	17	2.4	17	95	0	71	35	25	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059322--1059373	20	2.5	20	81	3	59	38	21	7	32	1.82
1060710--1060748	20	2.0	20	95	5	71	30	43	10	15	1.80
1065335--1065374	16	2.3	18	87	12	57	77	5	0	17	0.94
1066365--1066409	21	2.1	21	87	0	63	31	28	24	15	1.96
1067588--1067908	103	3.1	103	94	0	561	26	13	24	36	1.92
1067915--1068034	47	2.6	47	91	1	197	24	22	22	30	1.99
1067915--1068039	23	5.3	23	78	2	133	24	21	22	31	1.98
1069757--1069802	24	1.9	24	82	8	58	32	0	0	67	0.91
1073310--1074361	106	10.0	106	91	2	1624	21	18	26	33	1.96
1074356--1074920	83	6.9	82	77	5	561	24	20	25	29	1.99
1074362--1074920	164	3.4	164	96	0	978	24	20	25	29	1.99
1078317--1078361	19	2.4	19	92	3	74	66	8	13	11	1.44
1078970--1079002	17	1.9	17	93	0	57	72	9	12	6	1.26
1082262--1082286	2	12.5	2	100	0	50	52	0	48	0	1.00
1088758--1088797	2	20.0	2	94	0	71	47	2	0	50	1.14
1091025--1091071	22	2.1	22	92	0	76	29	21	21	27	1.98
1091643--1091682	21	1.9	21	89	0	62	25	17	27	30	1.97
1091725--1091772	22	2.2	21	88	3	69	18	29	16	35	1.93
1098860--1098913	19	2.9	18	83	8	72	42	18	7	31	1.78
1099169--1099487	159	2.0	158	90	1	505	21	23	18	36	1.95
1102533--1102564	4	8.0	4	100	0	64	25	0	25	50	1.50
1105189--1105219	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127931--1128026	28	3.3	29	81	8	115	36	13	11	38	1.81
1131378--1131563	95	2.0	95	91	0	300	23	10	23	43	1.85
1134594--1134649	15	3.6	15	79	9	67	42	12	12	32	1.80
1134597--1134647	17	3.1	17	77	11	61	43	11	9	35	1.75
1134815--1134870	20	2.7	21	86	5	87	28	25	26	19	1.99
1135066--1135120	13	4.2	13	75	13	58	47	12	5	34	1.65
1135106--1135204	33	3.0	33	94	1	164	45	15	7	32	1.73
1135199--1135238	21	1.9	21	94	0	71	47	7	15	30	1.72
1137521--1137566	12	3.6	12	81	16	56	17	19	17	45	1.85
1137520--1137559	15	2.9	14	85	14	57	20	17	15	47	1.83

Tables:   1   2   3   4   5   6   7   8