genome.fa.s6573.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006573.1 Hibiscus syriacus cultivar Beakdansim tig00016106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1218788

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147614--147697	8	9.9	8	73	19	55	77	2	17	2	0.99
147614--147694	28	3.0	28	74	16	80	76	2	18	2	1.01
150126--150193	21	3.2	21	80	0	91	32	27	14	25	1.95
150126--150203	21	3.7	21	78	0	75	32	26	17	23	1.97
152363--152985	53	12.2	53	74	11	473	30	9	19	40	1.83
152549--152717	41	3.8	41	68	23	103	27	11	21	39	1.87
152513--152874	94	3.7	94	86	7	426	29	10	20	40	1.85
153916--154810	139	6.5	139	87	4	1290	36	16	20	25	1.94
153916--154810	418	2.2	409	88	4	1314	36	16	20	25	1.94
156273--156310	20	1.9	20	89	10	60	15	0	13	71	1.16
156775--156810	14	2.6	14	90	0	54	25	13	2	58	1.49
156802--156861	17	3.6	16	80	13	52	20	6	1	71	1.17
156812--156860	22	2.4	19	80	16	53	16	6	2	75	1.09
160394--160456	24	2.6	24	78	19	60	47	1	3	47	1.27
160428--160471	22	2.0	23	86	4	63	40	2	2	54	1.25
160759--160809	14	3.6	14	78	2	57	56	0	0	43	0.99
160785--160866	20	3.7	21	69	19	60	53	0	1	45	1.08
160808--160867	22	2.7	22	77	12	59	53	0	1	45	1.10
161675--161734	23	2.6	22	84	5	66	41	8	18	31	1.80
161761--161820	23	2.6	23	81	0	57	40	6	16	36	1.75
161674--161872	86	2.3	87	91	2	330	42	10	14	32	1.79
161897--162553	198	3.3	198	87	4	914	30	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162654--162747	30	3.2	30	79	11	81	50	1	1	47	1.15
162665--162751	14	6.2	14	69	9	52	47	1	1	50	1.16
162679--162747	28	2.5	28	74	6	70	49	1	1	47	1.19
163435--163525	30	3.1	30	80	10	82	50	1	1	47	1.15
163443--163544	14	7.2	14	70	11	57	48	1	0	49	1.19
163457--163525	28	2.5	28	74	6	70	49	1	1	47	1.19
163508--163552	14	3.1	15	84	6	58	55	2	0	42	1.12
163561--163612	24	2.2	24	80	16	65	38	0	5	55	1.24
163866--163915	23	2.2	23	88	0	73	34	16	12	38	1.85
163850--164079	87	2.7	86	92	3	383	32	14	11	41	1.82
163952--163996	23	2.0	23	90	0	72	37	13	11	37	1.80
164038--164090	23	2.3	23	96	0	97	35	20	7	35	1.81
165135--165230	46	2.1	46	96	0	174	35	19	9	35	1.84
165613--165668	15	3.6	15	76	9	58	44	10	12	32	1.77
165616--165649	17	2.0	17	88	0	50	41	8	11	38	1.73
166773--166871	33	3.0	33	94	1	164	45	15	7	32	1.73
166866--166907	21	2.0	21	95	0	75	47	7	14	30	1.71
173780--173818	8	5.0	8	81	6	53	33	0	28	38	1.57
173921--174376	128	3.7	115	90	4	538	23	23	18	33	1.97
174032--174376	128	2.7	128	91	2	552	23	23	20	33	1.97
174431--174503	32	2.2	32	83	7	85	49	2	13	34	1.57
174776--174875	33	3.0	34	83	2	139	39	3	4	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175398--175487	21	4.3	20	79	9	92	23	27	31	17	1.97
175491--175538	21	2.3	21	85	0	60	22	12	39	25	1.89
177277--177320	19	2.4	19	81	7	56	54	2	0	43	1.12
177264--177351	17	5.1	18	70	21	55	59	2	0	38	1.10
177292--177363	34	2.1	34	82	10	85	63	5	0	30	1.17
183270--183332	23	3.0	20	71	15	63	52	15	4	26	1.63
183427--183480	29	1.9	27	92	3	81	53	11	12	22	1.70
183925--183992	31	2.2	31	100	0	136	11	50	22	16	1.77
192941--192981	20	2.0	20	100	0	82	19	46	0	34	1.50
197403--197492	28	3.2	28	96	0	162	45	15	0	38	1.46
198336--198401	31	2.1	32	82	2	80	18	16	12	53	1.73
201687--201713	14	1.9	14	100	0	54	51	0	18	29	1.46
205097--205127	16	1.9	16	93	0	53	12	3	25	58	1.50
205875--205928	20	2.7	21	80	8	67	38	11	18	31	1.86
208769--208809	18	2.3	18	100	0	82	34	12	17	36	1.87
210200--210245	20	2.3	20	88	7	67	28	28	17	26	1.98
213687--213964	45	6.2	45	92	0	457	31	21	6	40	1.78
213791--213864	25	3.2	25	63	31	63	29	20	8	41	1.81
213687--213998	135	2.3	135	89	1	475	31	20	7	41	1.79
214102--214183	40	2.0	40	100	0	164	32	26	17	23	1.96
220542--220649	35	3.1	35	97	1	198	34	21	11	33	1.89
222240--222329	38	2.4	38	94	0	162	53	24	5	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223901--223926	2	13.0	2	100	0	52	50	0	0	50	1.00
224587--224663	20	3.8	20	81	11	86	44	11	16	27	1.83
231089--231150	29	2.2	29	85	5	92	43	0	6	50	1.28
234745--234800	29	1.9	29	85	7	78	51	10	0	37	1.37
244401--244442	21	2.0	21	95	0	75	26	28	21	23	1.99
244550--244595	19	2.4	19	85	0	56	36	15	10	36	1.82
244659--244718	29	2.0	31	90	6	97	41	15	6	36	1.73
248850--248938	44	2.0	44	93	0	151	49	14	15	20	1.79
251024--251069	21	2.2	20	79	17	58	52	4	0	43	1.21
252260--252303	19	2.2	20	84	11	56	20	22	20	36	1.95
252318--252510	36	5.4	36	80	4	210	23	21	26	28	1.99
252764--252817	28	1.9	28	82	14	67	50	5	3	40	1.44
256337--256392	24	2.4	23	75	3	58	39	23	17	19	1.92
256375--256487	23	4.8	24	74	7	88	36	24	18	20	1.95
256394--256487	24	3.9	24	80	2	91	35	24	18	22	1.96
263348--263406	24	2.5	23	80	2	73	37	22	23	16	1.94
263410--263478	24	2.8	25	82	4	86	34	23	20	21	1.96
263400--263501	23	4.3	23	78	7	87	34	21	22	21	1.97
265197--265241	23	2.0	23	86	0	63	26	26	26	20	1.99
265927--265969	21	2.0	21	86	0	59	16	25	27	30	1.97
283534--283783	126	2.0	126	90	1	394	36	22	14	26	1.92
287506--287550	2	23.0	2	90	4	74	0	53	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293133--293198	2	33.0	2	100	0	132	50	0	0	50	1.00
298983--300133	226	5.1	226	90	1	1654	38	13	16	31	1.88
298983--300133	451	2.6	451	88	2	1681	38	13	16	31	1.88
300525--300563	2	19.5	2	94	0	69	51	0	0	48	1.00
300565--300599	2	17.5	2	93	0	61	2	0	45	51	1.16
301577--302355	118	6.9	117	64	16	332	36	13	17	32	1.88
301382--302446	225	4.7	226	86	1	1413	37	13	17	31	1.88
301396--302446	451	2.3	451	85	2	1434	37	13	17	31	1.88
302587--302617	2	15.5	2	93	0	53	51	0	0	48	1.00
302856--302893	9	4.3	9	80	6	51	55	2	0	42	1.14
302862--302893	13	2.3	15	89	10	50	56	3	0	40	1.15
303921--304169	118	2.1	118	84	1	320	34	11	17	36	1.85
304039--306533	226	11.1	226	79	7	2242	38	13	16	32	1.87
303695--304395	344	2.0	344	90	1	1084	36	12	16	34	1.86
303648--304729	570	1.9	565	84	3	1437	37	13	16	32	1.87
304738--308282	226	16.1	202	68	18	1000	38	13	15	31	1.87
304295--308282	653	6.0	648	81	9	4356	38	13	15	31	1.87
306535--307636	225	4.9	226	84	3	1454	38	14	15	31	1.87
307059--307634	107	5.2	108	66	15	312	40	13	15	30	1.86
307717--308281	108	5.1	107	65	16	283	38	15	14	31	1.88
307638--308373	219	3.3	221	80	5	793	38	14	14	32	1.88
308498--308526	2	14.5	2	100	0	58	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308526--308559	2	17.0	2	87	0	50	50	2	0	47	1.16
309949--309987	14	2.8	14	92	0	60	20	33	25	20	1.97
321766--322367	118	5.3	117	65	14	331	37	14	16	31	1.89
321546--322412	226	3.8	226	87	2	1168	38	13	16	31	1.87
323114--323715	118	5.3	117	65	14	340	37	14	16	31	1.89
322894--323760	226	3.8	226	87	2	1168	38	13	16	31	1.87
324243--325395	226	5.1	225	84	2	1474	37	14	15	31	1.88
324246--325395	451	2.6	449	85	3	1565	38	14	15	31	1.88
325781--325828	2	24.5	2	95	4	89	50	0	0	50	1.00
325828--325893	2	33.5	2	93	3	116	0	0	46	53	1.00

Tables:   1   2   3   4   5   6   7