genome.fa.s6573.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006573.1 Hibiscus syriacus cultivar Beakdansim tig00016106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1218788

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326124--326824	226	3.1	225	85	3	885	38	13	15	31	1.87
327210--327299	2	45.5	2	97	2	173	50	0	0	50	1.00
327299--327367	2	34.5	2	97	0	129	0	0	47	52	1.00
327594--328522	226	4.1	227	85	3	1178	38	13	15	31	1.87
327595--328520	450	2.1	451	84	3	1220	38	13	15	31	1.87
329443--330598	226	5.1	226	87	1	1505	38	13	16	31	1.87
330965--330995	2	15.5	2	93	0	53	0	0	45	54	0.99
331287--331316	15	2.0	15	93	0	51	23	13	26	36	1.92
331726--332878	226	5.1	226	87	2	1505	38	14	16	31	1.88
333041--333083	2	21.5	2	90	9	70	2	0	46	51	1.13
334068--334424	118	3.1	117	66	14	308	37	13	17	32	1.88
333903--334949	226	4.6	226	86	2	1379	39	13	15	31	1.87
335074--335123	2	25.0	2	95	0	91	48	2	0	50	1.12
335339--335373	2	17.5	2	87	0	52	2	0	45	51	1.16
335665--335694	15	2.0	15	93	0	51	23	13	26	36	1.92
336104--337710	226	7.1	226	89	1	2024	37	14	16	32	1.88
338128--338176	2	24.5	2	95	0	89	2	0	46	51	1.12
339867--340962	226	4.9	225	83	6	1308	38	13	15	31	1.87
341925--343078	226	5.1	225	85	2	1512	38	14	16	31	1.88
341928--343078	451	2.5	451	85	3	1582	38	14	16	31	1.88
343483--343533	2	25.5	2	91	0	84	0	0	45	54	0.99
343483--343533	14	3.6	14	97	0	93	0	0	45	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345394--346036	226	2.9	226	89	1	947	38	13	16	32	1.87
345913--346162	123	2.0	127	96	3	472	35	12	18	34	1.88
346077--346597	225	2.3	225	84	4	667	38	13	15	32	1.86
346757--346789	2	16.5	2	100	0	66	48	0	0	51	1.00
347011--347047	2	18.5	2	94	0	65	0	0	45	54	1.00
347336--347368	15	2.2	15	94	0	57	24	15	27	33	1.95
347690--348804	218	5.1	223	83	7	1219	37	14	16	31	1.88
348951--348982	2	16.5	2	93	6	57	50	0	0	50	1.00
349826--350398	108	5.1	108	65	12	321	39	13	16	31	1.87
349984--350574	118	5.2	116	66	15	316	38	13	16	31	1.87
349827--350873	226	4.6	225	86	2	1357	38	13	15	31	1.87
350998--351028	2	15.5	2	100	0	62	48	0	0	51	1.00
351566--351595	15	2.0	15	93	0	51	23	13	26	36	1.92
352005--353386	226	6.1	226	88	1	1784	37	14	16	32	1.88
352390--353194	108	7.2	108	65	14	356	37	14	15	32	1.88
352496--352855	118	3.1	115	67	16	287	37	14	15	33	1.88
353804--353838	2	17.5	2	93	0	61	2	0	45	51	1.16
354589--355711	226	5.0	225	87	1	1446	37	14	15	32	1.88
355357--355729	108	3.4	105	71	14	311	39	13	13	32	1.84
356908--358061	226	5.1	226	84	1	1463	37	13	16	31	1.88
356914--358061	451	2.5	450	85	2	1536	37	13	16	32	1.88
359138--360290	226	5.1	226	87	2	1489	38	13	16	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359138--360290	451	2.6	450	85	2	1519	38	13	16	31	1.87
360648--360688	2	21.5	2	80	9	50	48	2	0	48	1.14
361668--362037	118	3.2	118	68	16	331	38	14	17	30	1.89
361443--362552	226	4.9	225	86	2	1352	38	13	16	31	1.87
363756--364909	226	5.1	225	84	4	1464	37	14	16	32	1.88
365320--365354	2	17.5	2	93	0	61	0	0	45	54	0.99
366089--367239	226	5.1	225	85	2	1400	38	13	15	32	1.87
369835--369870	18	2.0	18	88	0	54	30	16	0	52	1.44
373199--374127	226	4.1	226	85	2	1226	37	14	16	31	1.88
374275--374312	2	19.0	2	100	0	76	50	0	0	50	1.00
374551--374580	2	15.0	2	100	0	60	50	0	0	50	1.00
375141--376565	226	6.3	226	86	2	1873	38	15	16	30	1.89
375141--376565	677	2.1	677	87	3	2039	38	15	16	30	1.89
376694--376764	2	36.5	2	94	5	128	49	0	0	50	1.00
377001--377047	2	24.5	2	91	8	80	51	0	0	48	1.00
377802--378789	226	4.4	225	85	3	1261	38	14	15	31	1.88
378457--379138	349	2.0	349	90	1	1073	37	14	16	32	1.89
378675--378928	124	2.1	124	87	2	359	37	12	18	31	1.88
378798--379756	225	4.3	226	86	2	1286	37	14	16	32	1.88
378014--379601	800	2.0	801	88	1	2400	37	14	16	31	1.88
378798--379754	451	2.1	451	89	1	1447	37	14	16	32	1.88
380898--381815	224	4.1	225	85	3	1216	37	14	16	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383077--384505	226	6.3	226	86	2	1866	38	14	16	30	1.89
383741--384313	108	5.1	107	65	16	309	38	15	16	29	1.89
384630--384660	2	15.5	2	93	0	53	48	0	3	48	1.17
384899--384930	2	16.5	2	93	6	57	50	0	0	50	1.00
384934--384972	2	19.5	2	83	0	51	2	0	41	56	1.13
385704--386859	226	5.1	224	83	5	1342	38	14	16	31	1.88
385708--386859	452	2.6	448	84	3	1481	38	13	16	31	1.88
387280--387316	2	18.5	2	94	0	65	0	0	45	54	1.00
388044--389184	226	5.1	224	82	5	1298	37	14	16	31	1.88
389579--389615	2	19.5	2	89	10	60	51	0	0	48	1.00
389621--389671	2	25.5	2	88	7	77	0	1	45	52	1.12
389681--389994	157	2.0	157	100	0	628	33	13	14	39	1.84
390559--391712	226	5.1	226	85	3	1367	37	14	15	31	1.88
393995--394020	9	2.9	9	100	0	52	57	23	0	19	1.40
395083--395120	16	2.3	17	86	4	51	21	18	18	42	1.90
395841--395891	2	26.0	2	92	4	86	50	0	1	47	1.12
396126--396155	2	15.0	2	100	0	60	50	0	0	50	1.00
397104--398179	226	4.9	213	84	7	1124	37	14	16	31	1.89
398309--398333	2	12.5	2	100	0	50	48	0	0	52	1.00
398461--398517	25	2.3	25	100	0	114	29	15	10	43	1.80
399361--399582	118	1.9	118	91	0	363	36	13	19	30	1.90
399483--399941	225	2.0	225	85	2	609	39	13	14	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400857--402009	226	5.1	226	86	2	1478	37	13	16	31	1.88
402139--402185	2	23.5	2	100	0	94	48	0	0	51	1.00
402424--402508	2	43.5	2	90	4	138	50	2	0	47	1.14
403263--404416	226	5.1	226	85	2	1424	37	13	15	32	1.87
403263--404416	451	2.6	450	84	4	1518	37	13	15	32	1.87
404796--404857	2	31.5	2	96	3	117	50	0	0	50	1.00
404859--404903	2	22.5	2	100	0	90	0	0	48	51	1.00
410343--410710	108	3.3	107	68	14	276	37	14	16	32	1.89
410010--411161	226	5.1	224	86	2	1458	38	13	16	32	1.88
410741--410784	23	1.9	23	85	0	61	25	11	25	38	1.89
411569--411613	2	22.5	2	93	0	72	0	2	44	53	1.13
412326--413241	226	4.1	226	85	1	1223	37	13	16	31	1.88
413677--413710	2	17.0	2	100	0	68	0	0	50	50	1.00
415817--416229	200	2.1	200	92	0	673	34	14	14	37	1.86
418376--418429	12	4.5	12	80	0	54	53	5	7	33	1.52
419397--419616	54	4.1	53	84	3	242	27	18	20	32	1.96
419401--419607	108	1.9	108	84	0	279	27	18	20	33	1.96
421545--421576	17	1.9	16	93	6	55	0	12	0	87	0.54
421546--421575	15	1.9	16	93	6	53	0	13	0	86	0.57
430228--430272	18	2.5	18	81	0	54	42	4	31	22	1.73
430719--431593	199	4.5	199	81	8	1014	32	14	12	40	1.83
431065--431423	179	2.0	177	89	3	542	31	14	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434231--434275	19	2.4	19	88	3	65	48	20	0	31	1.49
439209--439268	27	2.2	27	90	0	93	33	25	20	21	1.97
446237--446262	3	8.7	3	100	0	52	65	0	34	0	0.93
448400--448494	36	2.6	36	94	0	172	43	15	21	20	1.88
455695--455728	17	2.1	17	88	5	52	41	0	14	44	1.45
461956--461988	8	3.9	9	84	15	52	30	0	21	48	1.50
463567--463616	25	2.0	25	100	0	100	24	24	24	28	2.00
464277--464404	34	4.0	32	77	17	142	41	3	3	52	1.33
464281--464401	29	3.9	29	77	15	118	41	3	3	52	1.34
464280--464431	34	4.7	32	72	14	98	42	3	3	49	1.40

Tables:   1   2   3   4   5   6   7