genome.fa.s6936.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006936.1 Hibiscus syriacus cultivar Beakdansim tig00017808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2176229

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 982 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234264--234290	3	9.0	3	100	0	54	66	0	0	33	0.92
235963--236186	111	2.0	111	91	0	358	42	12	12	31	1.81
240692--240723	14	2.3	14	94	0	55	62	0	0	37	0.95
242318--242387	35	2.0	35	85	2	95	37	15	18	28	1.92
248976--249010	16	2.1	17	89	5	54	17	0	40	42	1.49
250355--250496	41	3.5	41	91	0	221	16	19	26	38	1.92
250380--250491	20	5.5	20	67	4	80	11	20	27	40	1.87
250358--250469	21	5.4	21	67	8	86	16	18	26	37	1.93
250364--250530	82	2.0	81	85	6	221	16	18	25	39	1.91
250606--250703	6	17.2	6	97	1	152	36	46	16	0	1.47
251178--251208	5	6.4	5	96	3	55	0	41	22	35	1.54
251206--251261	5	10.4	5	98	1	76	0	19	53	26	1.45
251344--251409	19	3.3	19	72	12	69	40	21	19	18	1.91
251422--251494	20	3.6	20	78	10	94	38	24	24	12	1.90
251353--251516	41	4.0	42	92	4	230	37	23	21	17	1.93
259684--260988	648	2.0	649	95	0	2371	39	16	9	34	1.81
263365--263426	29	2.1	30	87	3	90	30	20	6	41	1.78
269658--269688	15	2.1	15	100	0	62	35	0	6	58	1.24
270812--270874	19	3.3	19	86	2	81	34	19	4	41	1.72
292771--292866	41	2.4	41	84	5	124	35	19	20	23	1.96
295049--295098	20	2.5	20	86	0	64	42	14	12	32	1.82
298269--298321	21	2.5	21	93	0	88	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302706--303021	45	7.1	45	85	1	384	30	20	9	39	1.85
302710--303021	134	2.3	135	85	2	414	30	20	9	39	1.85
302710--303058	134	2.6	134	83	2	335	30	21	10	37	1.87
308174--308211	2	19.5	2	83	5	51	47	0	5	47	1.24
316353--316588	118	2.0	118	100	0	472	31	16	13	38	1.87
316667--316743	24	3.2	24	75	3	66	20	18	18	42	1.89
319444--319515	19	3.7	19	70	9	56	33	12	5	48	1.64
320538--320663	18	7.0	18	94	0	225	38	22	3	35	1.73
327828--327891	19	3.3	20	72	14	62	28	17	4	50	1.66
329385--329429	20	2.3	20	88	3	65	37	24	0	37	1.56
333541--333576	15	2.6	14	87	12	56	72	0	0	27	0.85
335250--335294	22	2.0	23	91	4	74	71	4	0	24	1.05
335634--336492	113	7.6	113	89	2	1262	27	19	15	37	1.92
335634--336492	339	2.5	339	93	0	1445	27	19	15	37	1.92
339678--339905	114	2.0	114	94	0	402	32	19	15	32	1.93
344953--345037	43	2.0	44	85	2	118	31	23	11	32	1.91
346970--347210	127	1.9	129	83	8	323	44	8	8	38	1.65
349011--349063	3	19.0	3	81	14	60	66	1	0	32	1.03
349011--349066	19	3.0	18	79	7	67	66	1	0	32	1.03
348989--349067	22	3.8	21	77	14	74	62	1	0	36	1.04
349011--349074	22	2.9	22	77	13	69	67	3	0	29	1.06
350558--350591	16	2.1	16	100	0	68	32	17	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350781--350844	21	3.1	20	78	14	67	21	1	26	50	1.58
358168--358292	35	3.6	35	82	2	162	24	20	18	36	1.94
366912--366947	18	2.0	18	88	0	54	19	19	41	19	1.90
367588--367715	35	3.7	34	76	9	114	23	20	16	39	1.91
367607--367709	35	2.9	35	81	2	118	26	18	17	37	1.93
372617--373167	54	10.3	54	88	1	732	26	17	21	35	1.95
372617--373167	107	5.1	107	88	0	753	26	17	21	35	1.95
378053--378733	54	12.7	54	83	4	822	24	16	20	37	1.93
383967--384042	24	3.0	26	75	13	77	72	1	5	21	1.12
383967--384040	25	3.0	25	75	20	75	72	1	5	20	1.11
384012--384095	4	20.8	4	77	16	57	72	0	1	26	0.92
384014--384170	62	2.5	64	81	12	193	68	0	2	29	1.03
384118--384160	12	3.6	12	96	0	77	72	0	2	25	0.97
384031--384171	12	12.8	11	72	21	66	66	0	2	31	1.03
385311--385426	36	3.2	36	82	4	144	38	12	19	29	1.88
385322--385414	37	2.6	36	91	1	141	43	13	20	22	1.87
385575--385647	37	2.0	37	88	0	110	39	13	19	27	1.89
385548--385782	102	2.3	100	85	5	312	36	11	17	33	1.87
385709--385869	87	1.9	84	88	5	243	33	12	17	36	1.87
385860--385940	37	2.2	37	84	4	101	39	11	20	28	1.87
386177--386451	106	2.6	106	84	1	309	23	18	22	35	1.95
387047--387136	32	2.8	32	84	3	128	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388068--388205	69	2.0	69	95	0	249	26	14	21	36	1.92
391167--391252	31	2.7	30	77	12	75	70	1	10	17	1.21
391203--391301	44	2.2	44	80	8	112	74	1	9	15	1.11
391203--391321	54	2.2	53	80	11	127	73	0	8	16	1.11
391279--391374	32	3.0	32	77	17	101	67	1	2	29	1.08
391291--391442	45	3.3	46	72	12	132	65	1	2	30	1.15
391400--391461	26	2.2	28	78	15	67	66	3	1	29	1.17
396261--396304	20	2.1	21	95	4	81	25	34	9	31	1.87
396427--396484	20	2.9	20	89	5	82	27	31	6	34	1.83
396427--396491	20	3.2	20	86	4	69	27	30	6	35	1.81
396457--396539	30	2.8	29	78	8	87	30	30	9	30	1.89
407425--407502	30	2.6	30	85	0	102	32	28	11	28	1.92
408164--408223	31	1.9	31	96	0	111	33	25	6	35	1.82
411151--411196	21	2.1	21	88	4	65	63	0	8	28	1.24
411902--411934	15	2.1	17	88	11	52	69	6	3	21	1.24
415601--415653	24	2.2	24	86	3	72	58	13	13	15	1.64
422880--423019	30	4.7	30	98	0	262	33	22	20	24	1.97
422998--423041	22	2.0	22	100	0	88	45	18	18	18	1.86
427343--427475	30	4.4	30	99	0	257	32	24	19	24	1.98
427343--427500	60	2.6	60	92	1	244	33	24	18	22	1.97
427461--427553	31	3.0	31	79	3	98	34	21	17	26	1.95
429925--430152	45	5.0	45	81	2	251	31	20	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429925--430113	90	2.1	91	89	3	283	31	19	8	39	1.83
433865--433937	29	2.4	31	75	20	75	27	20	6	45	1.76
434619--434657	15	2.6	15	80	11	53	35	7	5	51	1.53
437386--437564	64	2.8	62	78	9	173	29	16	25	28	1.97
444124--444163	21	1.9	21	89	0	62	30	7	5	57	1.48
446092--446268	64	2.8	64	79	3	187	31	16	22	29	1.96
474043--474330	141	2.0	142	98	1	562	32	19	9	39	1.83
474747--474855	52	2.1	52	98	1	211	36	14	16	32	1.89
481383--482186	256	3.1	255	75	11	712	34	14	15	35	1.88
482187--482249	14	4.5	14	71	25	53	76	6	7	9	1.16
482189--482228	14	3.1	13	89	10	64	77	7	7	7	1.13
483260--483465	96	2.1	96	84	7	283	36	14	22	27	1.92
483840--484320	45	10.7	45	84	0	514	45	11	18	24	1.83
486754--486804	25	2.0	26	85	11	70	41	1	3	52	1.31
486792--486847	21	2.7	20	79	20	69	39	5	0	55	1.23
496212--496302	37	2.5	36	77	13	96	75	2	15	6	1.10
500311--500432	47	2.7	45	82	7	149	38	8	22	31	1.83
503156--503243	11	7.7	11	73	15	56	78	2	10	9	1.05
503164--503233	24	2.8	26	82	10	92	78	1	8	11	1.02
507261--507375	47	2.6	44	82	9	142	37	7	21	33	1.82
508591--508648	21	2.7	22	81	10	75	44	5	0	50	1.24
509887--509970	18	4.6	17	70	18	55	15	3	3	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509887--509953	9	7.4	9	71	17	50	16	4	2	76	1.08
509922--509976	19	2.9	18	82	15	67	14	1	5	78	1.02
509922--509976	18	2.9	19	85	15	71	14	1	5	78	1.02
509924--509983	18	3.2	19	81	6	52	18	1	5	75	1.07
510014--510044	16	1.9	16	100	0	62	35	6	0	58	1.24
510197--510223	6	4.5	6	100	0	54	44	0	0	55	0.99
512821--512913	10	9.4	9	70	21	53	12	3	4	79	1.00
512821--512913	17	5.4	17	72	15	57	12	3	4	79	1.00
517133--517308	96	1.8	95	81	7	221	38	13	21	26	1.90
517690--518217	45	11.7	45	88	0	741	44	11	20	23	1.84

Tables:   1   2   3   4   5   6   7   8   9