genome.fa.s6936.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006936.1 Hibiscus syriacus cultivar Beakdansim tig00017808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2176229

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 982 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519677--519728	20	2.6	20	79	8	61	25	30	11	32	1.91
523555--523926	165	2.3	163	85	6	484	36	17	19	27	1.94
523555--523960	55	7.4	54	81	4	433	35	19	18	25	1.95
529787--529826	21	2.0	21	90	5	64	15	40	12	32	1.84
533581--533911	165	2.0	165	100	0	662	31	13	19	35	1.90
551728--551889	40	4.1	40	94	0	279	32	26	16	24	1.96
557454--557987	54	9.9	54	85	0	647	33	18	18	29	1.95
564444--564774	54	6.1	54	90	0	482	33	19	18	28	1.96
567927--568039	3	36.3	3	70	13	59	33	3	5	57	1.38
567927--568039	13	9.1	12	69	12	59	33	3	5	57	1.38
572070--572112	22	2.0	22	85	0	59	9	18	4	67	1.36
574573--574802	111	2.1	111	83	4	286	37	15	16	30	1.90
575333--575388	22	2.5	22	100	0	112	26	19	8	44	1.80
581554--581783	112	2.1	112	89	1	345	35	15	16	32	1.90
588410--588849	224	2.0	224	81	5	514	32	20	17	29	1.95
590254--590307	19	2.9	19	80	2	65	31	3	3	61	1.31
591739--591765	14	1.9	14	100	0	54	11	7	0	81	0.87
591973--592060	25	3.5	25	76	9	72	29	10	0	60	1.30
591999--592060	23	2.5	25	76	15	65	29	11	0	59	1.32
592058--592083	5	5.2	5	100	0	52	23	0	0	76	0.78
592616--592712	47	2.0	48	81	15	112	27	6	1	64	1.23
594284--594321	16	2.4	16	91	8	60	63	21	0	15	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596081--596159	23	3.5	23	74	6	81	27	18	24	29	1.98
602989--603127	34	3.8	34	73	18	134	29	23	10	35	1.89
603018--603172	45	3.7	43	73	18	148	29	23	10	36	1.89
602939--603180	79	3.1	79	90	0	376	28	22	10	38	1.87
603684--603732	20	2.5	19	83	3	62	20	30	18	30	1.96
607641--607898	59	4.4	59	89	1	358	36	19	12	31	1.89
608152--608550	59	6.8	59	90	3	617	36	19	11	32	1.88
607378--608415	517	2.0	517	99	0	2058	35	18	11	34	1.87
608888--609107	95	2.3	95	85	5	293	28	24	15	31	1.95
610230--610268	15	2.5	15	95	4	69	61	15	0	23	1.33
611161--611209	22	2.3	21	82	10	55	40	2	14	42	1.57
612827--612878	17	3.2	17	75	10	54	32	1	13	51	1.52
618237--618283	21	2.2	21	96	0	85	27	31	21	19	1.97
618294--618463	40	4.1	42	93	4	285	22	18	22	35	1.95
618294--618463	82	2.1	82	96	0	313	22	18	22	35	1.95
618588--618623	5	7.4	5	90	3	56	36	19	41	2	1.66
618921--618966	17	2.6	17	93	3	74	0	17	56	26	1.41
618921--618970	23	2.1	24	92	3	84	0	16	56	28	1.41
618921--618970	6	8.5	6	93	4	75	0	16	56	28	1.41
619067--619204	21	6.7	21	74	17	128	38	21	17	23	1.93
619067--619204	63	2.2	61	93	2	231	38	21	17	23	1.93
623339--623386	19	2.5	19	93	0	78	43	8	33	14	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630938--630997	19	3.2	19	72	9	59	10	16	6	66	1.41
636487--636525	12	3.0	13	88	7	53	7	10	0	82	0.86
659965--660019	20	2.6	22	77	11	62	32	20	18	29	1.96
665905--665960	20	2.7	21	77	8	69	37	14	25	23	1.92
666796--666835	19	2.2	19	90	4	64	32	2	7	57	1.40
667582--667628	23	2.1	23	84	4	60	53	6	2	38	1.39
669275--669431	32	4.9	32	84	1	138	50	18	2	28	1.60
669275--669431	64	2.5	64	83	0	179	50	18	2	28	1.60
669298--669470	32	5.4	32	80	0	168	52	17	2	27	1.59
669287--669463	96	1.8	96	80	2	212	50	16	2	29	1.60
669797--669834	20	1.9	20	88	0	58	57	2	5	34	1.35
671230--671268	19	2.1	18	85	4	51	56	10	5	28	1.54
674403--674468	17	3.8	17	76	11	62	78	6	6	9	1.08
677965--678037	27	2.8	27	95	4	132	34	4	6	54	1.46
678193--678230	14	2.5	16	83	16	62	63	0	0	36	0.95
678196--678227	14	2.3	14	100	0	64	62	0	0	37	0.95
678195--678235	14	2.9	14	85	3	55	60	2	0	36	1.10
678570--678610	21	2.0	21	95	0	73	43	19	9	26	1.82
678751--678812	25	2.5	25	83	0	70	66	3	0	30	1.08
679240--679340	45	2.3	44	86	8	134	26	17	6	48	1.73
679819--679919	41	2.5	40	81	9	107	49	0	1	47	1.19
687652--687700	17	2.8	17	84	9	64	36	6	16	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687729--687796	16	3.9	17	77	12	75	38	16	11	33	1.85
690398--690620	116	1.9	116	100	0	446	32	7	17	42	1.77
690726--690773	24	2.0	24	100	0	96	33	12	12	41	1.80
695366--695437	29	2.4	31	82	11	87	45	11	15	27	1.80
695805--695895	30	3.0	31	93	3	150	25	5	37	31	1.79
697132--697179	24	2.0	24	95	0	87	31	12	14	41	1.83
701699--702057	45	8.0	45	80	5	370	38	10	22	28	1.87
701699--701997	90	3.3	89	86	3	413	36	11	23	28	1.89
701701--702012	135	2.3	134	86	3	432	37	10	23	28	1.88
702894--703252	45	8.0	45	78	5	352	38	11	22	28	1.88
702894--703192	90	3.3	89	84	3	395	36	11	23	28	1.90
702896--703207	135	2.3	134	85	3	414	37	11	22	28	1.89
703172--703265	46	2.0	46	83	4	118	43	8	18	29	1.79
710724--710775	2	25.5	2	96	3	95	48	0	1	50	1.12
713830--713872	17	2.5	17	78	14	52	34	20	16	27	1.94
720671--720719	24	2.0	24	100	0	98	32	12	12	42	1.79
721600--721661	30	2.0	30	84	6	79	25	3	35	35	1.72
722349--722409	31	2.0	31	90	3	97	32	9	24	32	1.88
732747--732792	18	2.6	18	92	0	74	47	13	6	32	1.68
732848--732926	17	4.4	18	69	17	58	44	13	12	29	1.81
732864--732949	37	2.3	37	100	0	172	43	15	11	30	1.82
732867--732960	37	2.3	41	82	17	142	42	15	12	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735981--736022	17	2.5	17	80	7	50	45	2	11	40	1.54
736079--736137	19	3.4	17	75	13	66	38	15	11	33	1.84
740649--740695	23	2.0	23	83	0	58	31	17	12	38	1.87
741595--741642	7	6.9	7	100	0	96	41	0	0	58	0.98
742633--742931	149	2.0	149	100	0	598	26	8	18	47	1.76
745297--745322	12	2.2	12	100	0	52	34	15	7	42	1.75
748711--748740	2	15.0	2	92	0	51	46	0	3	50	1.18
753610--753650	14	2.9	14	80	20	50	19	9	0	70	1.14
754507--754549	15	2.8	16	79	6	54	27	6	23	41	1.80
754510--754558	15	3.3	15	76	0	53	28	8	24	38	1.84
754690--754760	24	3.0	25	84	12	87	23	25	22	28	2.00
756417--756454	20	1.9	19	94	5	67	31	26	13	28	1.93
756417--756466	20	2.5	20	87	9	59	32	26	16	26	1.96
756607--756657	21	2.5	21	77	3	59	27	21	15	35	1.94
756730--756768	20	2.0	20	89	0	60	43	20	7	28	1.79
757792--757833	16	2.9	14	83	13	57	38	0	9	52	1.34
759834--760054	110	2.0	110	86	1	309	35	8	19	37	1.82
760289--760318	8	3.6	8	91	8	51	13	0	0	86	0.57
764048--764077	15	1.9	16	93	6	53	76	3	6	13	1.11
765066--765134	26	2.7	26	75	2	77	14	15	13	56	1.67
765465--765513	20	2.4	19	83	12	62	59	14	4	22	1.52
777081--777121	21	1.9	22	95	5	75	41	26	9	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779164--779189	11	2.4	11	100	0	52	38	0	0	61	0.96
784229--784334	47	2.3	47	88	1	160	39	18	27	14	1.89
785158--785218	18	3.5	17	81	18	72	77	3	16	3	1.04
785158--785218	9	7.0	8	73	15	50	77	3	16	3	1.04
785158--785227	30	2.1	32	82	15	81	74	4	14	7	1.19
791724--791777	21	2.6	21	87	0	81	38	11	14	35	1.82
792411--792690	137	2.0	137	81	5	334	28	13	16	41	1.87
794036--794116	15	5.2	16	75	11	80	49	16	7	27	1.72
794034--794116	32	2.7	32	86	3	116	48	18	7	26	1.74
798375--798406	10	3.1	11	91	8	50	15	0	28	56	1.40

Tables:   1   2   3   4   5   6   7   8   9