Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006936.1 Hibiscus syriacus cultivar Beakdansim tig00017808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2176229

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 982 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2154755--2154843
45
2.0
45
93
0
151
30
17
25
25
1.98
2154932--2155941
81
12.5
81
89
1
1447
36
10
20
32
1.87
2154932--2155941
242
4.2
243
88
1
1447
36
10
20
32
1.87
2155992--2156104
45
2.5
46
84
5
142
49
7
18
23
1.74
2161081--2161142
28
2.2
28
91
0
97
35
16
8
40
1.78
2161986--2162303
26
12.0
26
91
5
401
46
16
0
37
1.47
2161986--2162411
94
4.4
94
86
7
606
46
16
0
37
1.47
2161986--2162411
120
3.6
120
93
1
757
46
16
0
37
1.47
2162294--2162411
26
4.5
26
100
0
236
46
15
0
38
1.46
2162647--2162702
5
11.2
5
94
0
58
8
58
1
30
1.39
2162669--2162710
5
8.2
5
92
5
66
19
59
0
21
1.38
2170680--2170713
12
2.8
12
95
0
59
38
5
23
32
1.79
2170840--2170926
37
2.2
39
86
8
124
66
4
0
28
1.11
2170847--2170926
16
4.6
16
72
23
56
65
5
0
30
1.14
2170876--2170921
23
2.0
24
86
4
67
63
4
0
32
1.14
2170839--2170921
12
6.8
12
69
21
57
66
4
0
28
1.12
2170894--2170927
17
1.9
18
94
5
61
64
2
0
32
1.08
2173002--2173052
7
7.1
7
75
20
52
70
1
0
27
0.98
2173003--2173039
14
2.5
15
86
8
58
67
2
0
29
1.04
2173002--2173054
22
2.5
22
90
3
81
69
1
0
28
0.99
2174685--2174753
31
2.2
31
84
0
84
34
10
14
40
1.80
2175495--2175529
13
2.8
12
83
8
52
68
0
0
31
0.90

Tables:   1   2   3   4   5   6   7   8   9

The End!