genome.fa.s7113.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007113.1 Hibiscus syriacus cultivar Beakdansim tig00018586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  836039

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263909--263943	18	1.9	18	94	0	61	54	25	2	17	1.57
264003--264272	140	1.9	140	96	0	504	28	12	15	43	1.83
264243--264507	20	13.9	20	80	10	295	32	22	19	26	1.97
264365--264546	74	2.5	73	91	0	283	31	21	20	26	1.98
264545--264602	20	2.9	20	78	0	71	12	15	25	46	1.80
264701--264762	14	4.3	14	77	6	61	46	14	0	38	1.45
266165--266276	42	2.7	42	76	5	111	23	18	37	20	1.94
266761--266827	20	3.5	18	80	11	71	37	25	17	19	1.94
266772--266827	20	2.8	20	86	0	76	37	23	17	21	1.94
266872--266917	20	2.3	20	92	0	74	19	19	26	34	1.96
267065--267114	18	2.8	18	96	0	91	42	8	20	30	1.80
268851--268904	20	2.7	20	88	0	81	38	25	18	16	1.92
269518--269631	20	5.7	20	88	3	158	26	23	26	23	2.00
269652--269711	21	2.8	22	74	5	68	33	20	25	21	1.97
269754--269803	19	2.6	19	96	0	91	22	22	26	30	1.99
272404--272453	16	3.2	16	80	11	59	14	26	32	28	1.94
272404--272440	15	2.4	16	90	4	58	13	29	29	27	1.94
272492--272547	15	3.6	15	81	9	76	16	26	35	21	1.94
272479--272547	32	2.2	32	91	0	111	17	26	33	23	1.96
274259--274332	38	2.0	38	94	2	132	14	9	36	39	1.79
274294--274355	28	2.2	28	94	0	106	16	8	32	43	1.77
274871--274954	44	1.9	44	87	0	123	35	20	13	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274943--275007	18	3.7	18	85	2	87	27	29	6	36	1.81
284310--284351	18	2.4	18	96	4	77	4	50	4	40	1.45
285684--285752	23	3.0	23	95	0	120	24	33	27	14	1.94
287031--287272	30	8.1	30	98	1	461	30	23	22	23	1.99
287569--287631	20	3.3	20	73	13	78	15	22	3	58	1.51
287556--287643	37	2.4	37	98	0	167	17	21	2	59	1.49
287582--287644	13	4.9	13	72	16	51	19	22	1	57	1.49
288825--288854	2	15.0	2	100	0	60	50	0	0	50	1.00
290468--290492	11	2.3	11	100	0	50	44	0	0	56	0.99
290940--291001	23	2.7	23	77	7	63	24	20	33	20	1.97
292542--293150	301	2.0	305	97	1	1163	30	19	11	38	1.87
295118--295157	21	1.9	21	90	10	64	32	10	5	52	1.56
298628--298674	24	2.0	24	86	0	67	19	14	12	53	1.73
298662--298710	12	4.1	12	83	0	62	22	10	14	53	1.71
298636--298694	24	2.5	24	80	5	66	18	15	15	50	1.78
298732--299036	152	2.0	153	81	7	352	22	9	28	38	1.86
302253--302299	2	23.5	2	100	0	94	51	48	0	0	1.00
302299--302334	2	18.0	2	94	0	63	50	2	0	47	1.15
303087--303180	24	3.9	24	85	0	116	22	10	13	53	1.71
303088--303175	12	7.3	12	75	0	77	20	11	14	53	1.72
303201--303507	152	2.0	156	85	5	419	20	11	30	37	1.88
305406--305470	21	3.2	20	76	8	69	26	29	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307609--307737	12	10.8	12	79	3	125	20	10	15	53	1.71
307592--307685	48	2.0	48	85	2	127	18	11	15	54	1.71
326023--326238	111	2.0	104	88	7	319	35	20	18	25	1.95
335809--335910	42	2.5	41	82	3	123	25	21	20	32	1.98
335414--336121	256	2.7	255	89	1	1029	33	15	16	34	1.90
336264--336319	3	18.7	3	92	0	58	25	0	8	66	1.21
339818--339868	20	2.5	20	81	12	59	23	17	23	35	1.95
342233--342271	21	1.9	20	89	5	60	41	10	15	33	1.81
346887--346928	20	2.0	21	90	4	68	38	9	14	38	1.78
349476--349517	20	2.0	21	90	4	68	40	9	14	35	1.78
351222--351465	133	1.8	133	91	1	400	37	15	12	34	1.86
351951--351994	20	2.2	20	92	4	72	29	18	4	47	1.68
352810--352891	43	1.9	43	84	0	110	30	9	9	50	1.68
353096--353957	145	6.0	144	86	2	1113	36	12	14	36	1.85
353596--353638	18	2.3	18	84	8	50	39	18	16	25	1.91
353096--353957	433	2.0	435	89	1	1327	36	12	14	36	1.85
354334--354383	21	2.4	21	75	0	55	42	14	10	34	1.78
359020--359068	12	4.1	12	81	0	53	12	32	0	55	1.37
367166--367207	22	2.0	21	85	4	57	26	9	38	26	1.87
373909--373951	20	2.2	20	95	0	77	30	20	11	37	1.89
375206--375244	17	2.4	17	82	4	53	23	0	2	74	0.94
377997--378050	3	19.0	3	87	11	78	27	1	0	70	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377996--378049	14	4.1	14	81	13	78	25	1	0	72	0.95
377997--378050	25	2.1	26	93	3	92	27	1	0	70	0.98
379455--379502	22	2.1	23	88	3	71	47	0	0	52	1.00
379431--379499	26	2.7	25	77	18	70	46	0	1	52	1.09
381200--381257	26	2.2	26	93	0	98	17	15	48	18	1.82
381615--381670	29	1.9	29	85	0	76	19	8	7	64	1.45
381616--381677	29	2.2	28	80	11	72	19	9	4	66	1.39
382512--382886	136	2.7	136	78	7	355	32	12	12	42	1.80
407887--407926	20	2.0	20	85	0	53	40	7	7	45	1.61
412734--412837	46	2.3	46	100	0	208	21	22	6	50	1.72
413571--413628	24	2.4	25	83	8	68	32	0	5	62	1.18
415184--415231	21	2.3	21	85	0	60	25	39	12	22	1.89
415235--415328	21	4.5	21	89	5	136	18	35	27	19	1.95
415850--415947	34	2.9	34	85	0	133	56	4	3	36	1.34
416781--417143	128	2.8	128	97	0	690	32	22	23	21	1.98
417224--417264	8	5.2	8	82	5	57	36	29	0	34	1.58
422148--422178	3	10.0	3	93	6	53	64	0	0	35	0.94
422790--422845	2	28.0	2	100	0	112	50	0	0	50	1.00
424245--424269	12	2.1	12	100	0	50	52	0	40	8	1.31
425162--425300	21	6.9	21	64	14	67	35	24	16	23	1.95
430935--430964	5	6.0	5	96	0	51	43	16	0	40	1.48
431441--431474	12	2.8	12	95	0	59	41	20	20	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441899--441949	18	2.8	18	84	0	66	23	21	29	25	1.99
448381--448451	16	4.4	16	85	0	97	22	26	11	39	1.88
448720--448766	14	3.7	14	71	26	50	44	0	4	51	1.21
448719--448768	23	2.1	24	96	3	93	48	0	4	48	1.20
449074--449107	9	3.9	9	84	7	52	38	0	5	55	1.24
449076--449114	17	2.2	18	95	4	71	41	2	5	51	1.38
449481--449559	14	5.6	14	71	16	74	20	0	26	53	1.46
449481--449539	21	2.8	21	78	0	73	20	0	27	52	1.47
449485--449559	28	2.7	28	78	12	82	20	0	26	53	1.46
449529--449553	7	3.6	7	100	0	50	28	0	12	60	1.32
449474--449546	21	3.6	21	68	17	64	23	0	23	53	1.46
449543--449650	49	2.2	49	83	3	128	33	3	9	53	1.50
449556--449650	49	2.0	49	85	2	129	34	4	7	53	1.48
449632--449665	9	3.9	9	84	7	52	38	0	5	55	1.24
449634--449672	17	2.2	18	95	4	71	41	2	5	51	1.38
449696--449722	13	2.1	13	100	0	54	55	0	0	44	0.99
449696--449738	13	3.1	14	86	6	52	55	0	2	41	1.12
450916--450974	21	2.8	21	81	0	73	18	0	28	52	1.46
450916--450981	21	3.2	20	76	8	69	18	0	28	53	1.45
450970--451078	49	2.2	49	83	3	130	33	6	9	50	1.60
450984--451078	49	2.0	49	87	2	138	34	7	7	50	1.58
451475--451528	21	2.6	21	79	5	56	22	0	22	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451539--451632	49	1.9	49	86	2	136	35	5	6	53	1.49
451625--451666	2	20.0	2	85	9	57	45	2	2	50	1.27
451614--451669	29	2.0	27	86	10	76	41	3	3	51	1.36
451818--451895	21	3.8	20	80	10	77	17	0	30	51	1.46
451946--452030	38	2.2	38	83	8	102	48	7	4	40	1.51
452039--452117	23	3.3	23	68	23	65	44	15	5	35	1.68
453401--453441	21	2.0	21	90	0	64	17	26	17	39	1.91
453402--453448	21	2.2	21	84	0	58	21	25	19	34	1.96
453438--453624	20	9.3	20	84	4	252	39	20	18	21	1.93
454486--454539	24	2.2	24	90	0	81	18	18	20	42	1.89

Tables:   1   2   3   4   5