genome.fa.s7113.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007113.1 Hibiscus syriacus cultivar Beakdansim tig00018586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  836039

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590893--590983	47	1.9	48	88	2	139	37	18	16	27	1.92
593447--593490	15	2.8	15	86	6	61	22	27	34	15	1.95
593479--593539	13	4.3	13	73	18	59	18	19	44	18	1.87
593470--593544	31	2.4	31	86	4	96	17	20	44	18	1.88
593485--593525	18	2.3	18	82	0	55	14	19	46	19	1.84
595611--595695	24	3.5	24	80	0	71	41	18	14	25	1.88
599049--599082	14	2.4	14	100	0	68	44	29	11	14	1.81
599162--599223	15	4.1	15	81	8	72	53	17	0	29	1.44
599309--599368	21	2.9	21	82	2	77	43	30	0	26	1.55
599329--599374	21	2.2	21	84	0	56	45	32	0	21	1.52
599331--599418	28	3.1	28	82	9	83	44	26	2	27	1.66
599563--599617	21	2.6	22	80	16	71	54	21	0	23	1.45
599742--599811	29	2.4	29	97	0	131	45	22	8	22	1.79
599799--599838	15	2.7	15	96	0	71	52	30	0	17	1.45
600167--600217	19	2.5	21	81	9	61	54	25	3	15	1.58
600234--600271	15	2.4	16	86	8	51	47	7	0	44	1.32
603545--603663	57	2.1	57	84	7	154	31	21	19	26	1.97
609451--609545	44	2.2	44	83	10	117	29	26	20	24	1.99
609451--609545	23	4.4	21	75	9	77	29	26	20	24	1.99
609470--609550	23	3.7	23	77	8	87	28	25	22	23	1.99
612202--612394	65	3.0	64	78	12	198	32	22	18	27	1.97
612370--612418	19	2.6	19	84	9	57	24	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615676--615716	17	2.5	17	81	18	52	58	0	2	39	1.11
615921--615976	21	2.5	22	80	11	62	41	1	1	55	1.21
623062--623093	16	2.0	16	93	0	55	31	21	12	34	1.91
624355--624399	23	2.0	23	90	0	72	24	26	26	22	2.00
624367--624681	149	2.1	149	95	1	560	33	21	16	27	1.95
625227--625278	2	26.0	2	100	0	104	50	0	0	50	1.00
626221--626265	21	2.1	21	87	0	63	15	24	28	31	1.96
628245--628284	18	2.2	19	86	13	57	47	10	22	20	1.79
631820--631887	6	11.3	6	95	0	109	36	0	51	11	1.39
634571--634755	31	6.0	31	97	1	336	19	19	22	38	1.93
635669--635706	15	2.5	15	91	0	58	13	68	13	5	1.37
639807--639899	20	4.6	21	80	5	84	31	21	20	26	1.98
639807--639965	21	7.7	21	81	3	81	37	21	17	23	1.94
639807--639941	61	2.2	62	81	4	148	36	22	18	22	1.95
640107--640164	22	2.7	22	89	5	84	20	44	12	22	1.84
642521--642587	20	3.3	20	91	0	107	35	25	22	16	1.94
642651--642704	19	2.8	19	91	0	81	9	16	25	48	1.76
642710--642777	20	3.4	20	79	0	73	19	19	23	38	1.93
642764--642806	19	2.2	20	87	4	61	18	11	18	51	1.76
643312--643381	21	3.3	20	72	5	59	22	35	20	21	1.96
643288--643381	42	2.2	42	84	3	118	22	36	20	21	1.95
644769--644805	14	2.6	14	95	0	65	29	2	18	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644942--644980	20	2.0	20	94	0	69	46	20	20	12	1.83
644967--645016	19	2.5	20	83	3	57	28	22	22	28	1.99
645023--645157	20	6.8	20	88	3	193	28	19	21	30	1.97
645023--645157	58	2.3	60	88	2	193	28	19	21	30	1.97
645128--645410	140	2.0	140	95	1	505	44	14	12	28	1.81
648611--648658	20	2.4	20	92	0	78	22	18	31	27	1.97
653126--653698	46	12.5	46	84	1	677	25	17	8	48	1.74
653126--653698	138	4.2	138	89	1	828	25	17	8	48	1.74
654021--654090	34	2.1	32	86	5	95	22	30	15	31	1.95
654447--654539	20	4.7	20	94	2	152	34	23	25	16	1.95
654574--654616	22	1.9	23	90	4	70	20	20	32	25	1.97
654739--654796	30	2.0	29	90	10	91	44	17	5	32	1.70
654739--654797	29	2.0	30	93	6	102	44	16	5	33	1.70
656076--656123	19	2.5	19	75	3	51	33	6	4	56	1.44
657411--657490	41	2.0	41	82	9	101	27	23	26	22	2.00
657515--657583	13	5.1	13	75	16	52	20	20	34	24	1.96
657514--657573	20	2.9	19	84	15	84	20	20	35	25	1.96
657514--657571	22	2.7	22	87	12	86	18	18	36	25	1.95
657663--657720	30	2.0	29	90	10	91	44	17	5	32	1.70
657663--657722	29	2.0	30	93	6	104	43	16	6	33	1.74
657757--657964	45	4.6	45	88	0	299	25	22	11	41	1.87
659902--659943	17	2.5	17	92	3	68	45	16	11	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660429--660469	2	20.5	2	100	0	82	51	0	0	48	1.00
660920--660980	23	2.7	23	81	0	86	29	27	24	18	1.98
661672--661810	61	2.2	63	84	5	192	26	20	20	31	1.98
667432--667500	23	3.0	22	81	12	77	31	26	23	18	1.97
676708--676747	21	1.9	21	85	10	55	30	17	15	37	1.90
676826--676861	18	2.0	18	88	0	54	22	19	30	27	1.98
677186--677217	2	16.0	2	100	0	64	50	0	0	50	1.00
683481--683555	23	3.4	22	82	10	82	25	26	24	24	2.00
689563--689592	15	2.1	15	93	6	53	43	6	23	26	1.78
689928--689979	18	2.9	18	91	0	77	19	23	32	25	1.97
690485--690514	16	1.9	16	93	6	53	40	0	13	46	1.43
693662--693691	15	2.1	15	93	6	53	43	6	23	26	1.78
693909--693948	21	1.9	21	94	0	71	37	10	12	40	1.77
695538--695576	20	1.9	21	84	5	53	53	2	0	43	1.14
696535--696587	15	3.2	16	80	17	56	64	5	1	28	1.27
696798--696823	11	2.4	11	100	0	52	7	0	42	50	1.31
696936--697083	61	2.4	61	78	6	149	22	31	27	18	1.97
700350--700406	24	2.4	24	100	0	114	33	26	17	22	1.96
705605--705650	23	2.0	24	82	4	58	45	13	8	32	1.73
713210--713252	22	2.0	22	95	0	77	41	11	11	34	1.78
716787--716855	3	22.0	3	85	14	95	31	0	0	68	0.90
716787--716855	13	5.5	13	93	5	115	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716787--716855	25	2.7	25	93	6	113	31	0	0	68	0.90
718185--718214	3	10.0	3	92	0	51	33	3	0	63	1.11
718271--718310	20	2.0	20	85	9	55	30	7	2	60	1.38
718404--718445	20	2.2	19	86	4	57	33	0	2	64	1.07
729733--729782	11	4.7	10	80	11	55	82	0	16	2	0.77
729729--729782	21	2.5	21	85	14	74	79	0	18	1	0.82
729733--729786	15	3.6	14	83	11	63	81	0	16	1	0.78
730139--730187	19	2.8	17	81	9	55	36	10	6	46	1.63
731323--732102	113	6.9	114	84	6	993	37	14	18	28	1.91
731323--732102	226	3.5	226	93	2	1297	37	14	18	28	1.91
731920--731983	20	3.2	20	65	12	51	42	9	20	28	1.83
732031--732251	120	1.8	121	85	6	313	39	13	20	26	1.89
732438--732502	3	22.0	3	79	17	66	32	0	0	67	0.91
732434--732502	25	2.7	25	84	13	95	30	0	0	69	0.89
732445--732502	19	3.2	19	83	11	77	32	0	0	67	0.91
733465--733504	20	2.0	20	85	9	55	30	7	2	60	1.38
733597--733638	20	2.2	19	86	4	57	33	0	2	64	1.07
737814--737859	20	2.4	18	83	13	65	39	8	30	21	1.84
738050--738088	2	19.5	2	100	0	78	48	0	0	51	1.00
751536--751802	90	2.9	92	91	5	441	36	21	14	26	1.93
753011--753056	22	2.1	22	84	8	58	47	0	2	50	1.13
753331--753365	16	2.2	16	90	10	54	42	11	17	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753868--753894	3	9.0	3	100	0	54	66	0	0	33	0.92
755458--755550	37	2.6	34	72	16	89	74	8	6	10	1.22
755479--755530	18	2.8	18	76	2	50	76	11	7	3	1.12
755746--755782	17	2.2	17	95	0	65	75	0	2	21	0.92
757812--758101	94	3.0	94	85	5	420	20	20	25	34	1.96
757770--758109	99	3.4	99	82	9	424	21	19	24	34	1.96
759217--759256	20	2.0	20	85	9	55	2	25	0	72	0.97
759294--759329	15	2.4	15	85	0	54	0	11	5	83	0.80
772687--772730	18	2.5	18	96	3	81	27	20	11	40	1.86
774792--774850	21	2.8	21	89	0	100	20	42	30	6	1.78

Tables:   1   2   3   4   5