genome.fa.s7703.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007703.1 Hibiscus syriacus cultivar Beakdansim tig00109916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1017536

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 603 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194867--194906	21	1.9	21	94	0	71	22	15	30	32	1.94
202285--202333	25	2.0	25	87	0	71	65	8	2	24	1.31
202796--202844	21	2.2	23	78	10	57	34	18	22	24	1.96
205121--205278	81	2.0	81	84	0	208	26	13	27	31	1.94
209404--209459	22	2.4	22	82	14	60	41	3	8	46	1.52
209419--209468	22	2.1	25	85	14	70	44	0	12	44	1.41
214667--214700	15	2.2	16	89	5	52	41	2	0	55	1.15
220593--220712	64	1.9	63	87	1	177	24	18	23	34	1.96
223872--223911	20	2.2	19	86	13	57	67	2	5	25	1.23
223884--223924	12	3.5	12	80	6	57	70	0	2	26	0.99
225341--225379	20	2.0	20	100	0	78	28	15	15	41	1.87
225844--225883	21	1.9	21	89	0	62	72	0	2	25	0.97
225844--225898	20	2.8	19	81	8	58	69	0	1	29	0.99
225838--225888	14	3.7	13	79	10	57	70	0	1	27	0.98
225893--225951	20	2.9	19	75	9	55	57	0	8	33	1.29
225893--225957	22	3.0	22	75	16	66	55	0	12	32	1.37
225977--226014	14	2.8	14	88	4	60	68	0	0	31	0.90
234204--234237	15	2.3	15	100	0	68	23	26	35	14	1.94
234203--234234	7	4.4	7	92	7	55	25	28	34	12	1.92
234232--234277	18	2.6	18	96	0	83	10	19	52	17	1.74
234211--234255	13	3.3	13	84	6	54	20	22	42	15	1.89
238042--238076	18	1.9	18	88	0	52	28	17	0	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239398--239443	18	2.6	18	96	0	83	10	19	52	17	1.74
239379--239421	13	3.3	13	93	0	77	16	20	46	16	1.84
241283--241325	22	2.0	22	100	0	86	34	13	18	32	1.90
248149--248185	4	9.2	4	87	0	56	27	2	24	45	1.66
252259--252337	3	25.7	3	82	5	95	59	0	0	40	0.97
252569--253238	113	6.0	113	90	1	929	29	18	15	37	1.91
254173--255047	83	10.7	83	93	2	1498	37	21	12	28	1.90
256194--256260	25	2.6	27	90	9	113	0	16	0	83	0.64
256194--256260	26	2.6	27	88	11	104	0	16	0	83	0.64
256193--256257	19	3.4	19	87	12	98	0	16	0	83	0.66
263569--263600	15	2.1	15	94	0	55	46	9	18	25	1.79
269031--269121	3	29.7	3	86	8	130	63	0	0	36	0.94
271727--271768	2	21.0	2	100	0	84	50	0	0	50	1.00
279403--279433	2	15.5	2	93	0	53	48	0	3	48	1.17
297776--297814	17	2.4	16	82	4	51	28	25	10	35	1.89
298906--298932	3	9.0	3	100	0	54	66	33	0	0	0.92
304666--304707	16	2.7	15	76	23	50	54	11	0	33	1.37
308785--308814	13	2.3	13	100	0	60	23	13	10	53	1.69
311959--312049	44	2.1	44	91	4	148	35	6	14	43	1.71
318129--318375	125	2.0	125	86	4	345	25	12	14	46	1.81
319077--319150	20	3.7	20	80	3	94	39	18	22	18	1.93
319074--319164	41	2.2	41	98	0	173	40	17	23	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319077--319166	20	4.4	20	78	4	90	38	18	24	17	1.92
319198--319249	20	2.6	21	85	11	74	28	28	17	25	1.97
319798--319842	19	2.4	19	92	0	72	48	26	15	8	1.74
319838--320022	19	10.1	19	77	14	174	12	22	22	43	1.86
319838--319927	39	2.3	38	94	1	153	12	20	22	45	1.83
319910--319997	33	2.6	33	92	1	140	11	25	25	38	1.89
319965--320022	20	2.9	20	80	10	64	13	24	18	43	1.87
322075--322141	21	3.2	21	66	6	55	23	35	20	19	1.95
323494--323529	14	2.6	14	95	0	63	30	0	25	44	1.54
323708--323804	19	5.6	19	67	22	79	12	23	19	44	1.85
323712--323804	33	2.8	33	96	0	168	12	23	19	44	1.85
325666--325720	20	2.7	20	74	5	56	30	21	25	21	1.98
326194--326230	14	2.6	14	86	0	56	48	21	0	29	1.50
326589--326639	20	2.5	20	93	0	84	33	23	23	19	1.97
326668--326740	14	4.5	15	74	22	60	13	20	19	46	1.83
326664--326730	18	3.8	19	83	16	92	13	22	17	46	1.83
326847--326883	14	2.6	14	86	0	56	48	21	0	29	1.50
326833--326912	40	2.0	41	80	7	92	52	17	0	30	1.45
328738--328804	19	3.5	19	81	4	80	38	23	22	14	1.92
328793--328849	13	3.9	13	77	22	60	49	24	17	8	1.75
328777--328854	31	2.4	33	91	4	124	48	23	17	10	1.78
328794--328865	32	2.2	32	90	4	110	48	26	16	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328861--328994	20	7.6	18	77	15	104	11	20	24	43	1.85
328883--328939	14	3.8	14	78	17	69	8	17	26	47	1.77
328866--328955	32	2.8	32	98	1	171	10	18	24	46	1.80
329464--329508	18	2.5	18	85	0	63	15	15	42	26	1.87
330827--330864	20	1.9	20	88	0	58	50	21	15	13	1.78
331113--331156	22	2.0	22	95	0	79	18	15	45	20	1.85
331344--331397	20	2.7	20	88	5	74	25	16	27	29	1.97
331428--331500	21	3.5	21	79	3	94	16	24	19	39	1.91
331444--331517	20	3.7	20	80	3	94	18	22	18	39	1.93
331430--331520	41	2.2	41	98	0	173	18	23	17	40	1.91
331748--331871	2	62.0	2	100	0	248	50	0	0	50	1.00
331979--332009	2	15.5	2	100	0	62	48	0	0	51	1.00
335330--335366	18	2.1	18	100	0	74	45	10	16	27	1.80
340414--340443	14	2.1	14	100	0	60	6	13	16	63	1.50
342616--342737	35	3.5	34	80	5	136	40	21	1	36	1.63
343798--343910	35	3.2	34	82	7	138	37	0	20	41	1.58
348041--348103	13	5.2	13	70	14	62	22	17	50	9	1.74
348041--348103	24	2.6	24	100	0	126	22	17	50	9	1.74
357573--357627	14	3.2	17	75	24	53	52	5	0	41	1.24
357567--357627	9	7.1	9	77	18	51	54	4	0	40	1.22
357620--357669	21	2.4	21	80	9	59	46	2	2	50	1.24
357588--357628	2	20.5	2	81	18	50	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357993--358841	225	3.8	225	80	4	885	29	19	19	31	1.96
363352--363414	30	2.1	31	87	3	92	61	0	11	26	1.29
364193--364244	14	4.0	13	76	14	54	55	3	0	40	1.18
364197--364251	14	4.1	14	75	15	53	56	5	0	38	1.23
364305--364407	2	55.0	2	69	22	55	48	3	0	46	1.27
370786--370945	83	1.9	83	96	2	295	42	17	6	33	1.76
371163--371227	31	2.1	31	94	0	112	30	13	10	44	1.78
372063--372126	26	2.5	26	76	0	74	73	0	4	21	1.01
373666--374560	80	10.9	85	72	6	610	25	20	23	30	1.98
373665--374560	165	5.5	164	85	2	1032	25	20	23	30	1.98
378693--378799	50	2.1	50	85	15	139	73	4	6	14	1.20
378692--378784	25	3.6	25	75	21	93	74	4	7	13	1.19
378673--378755	15	5.5	15	68	22	57	75	1	6	16	1.06
381717--381765	21	2.3	21	76	13	55	18	18	22	40	1.91
383224--383253	14	2.1	14	93	0	51	10	13	23	53	1.69
384080--384105	6	4.3	6	100	0	52	50	30	0	19	1.48
384694--384754	29	2.1	29	84	6	79	26	8	11	54	1.64
387239--387264	2	13.0	2	100	0	52	0	50	0	50	1.00
392611--392677	34	2.0	34	100	0	134	32	8	11	46	1.72
394952--394982	16	1.9	16	93	0	53	32	22	16	29	1.95
398554--398625	23	3.3	22	73	9	58	37	4	4	54	1.39
398914--398989	31	2.5	31	88	0	125	21	7	15	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399225--399300	31	2.5	31	84	0	116	22	7	14	55	1.65
398893--399519	311	2.0	311	98	0	1209	28	15	11	43	1.82
400570--400623	28	1.9	28	96	0	99	51	18	9	20	1.73
404922--404987	27	2.4	27	97	0	123	27	18	16	37	1.92
405757--405787	2	15.5	2	100	0	62	51	0	0	48	1.00
408433--408468	19	1.9	19	88	5	56	36	5	13	44	1.68
411319--412483	578	2.0	578	99	0	2321	36	15	13	34	1.87
414157--414206	26	2.0	25	84	4	64	64	8	0	28	1.22
423161--423199	19	2.1	19	100	0	78	15	10	20	53	1.70
429065--429095	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1   2   3   4   5   6