genome.fa.s7703.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007703.1 Hibiscus syriacus cultivar Beakdansim tig00109916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1017536

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 603 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430915--430966	2	28.5	2	81	18	69	51	0	0	48	1.00
430956--431052	36	2.7	36	87	7	128	45	4	6	44	1.48
431016--431075	24	2.5	24	86	0	93	46	1	6	45	1.39
431184--431242	29	2.0	30	87	6	86	16	5	1	76	1.05
432299--432359	26	2.3	26	80	0	68	29	1	6	62	1.30
432532--432580	5	10.4	5	85	10	68	20	2	0	77	0.87
432532--432582	14	3.6	14	84	10	77	21	1	0	76	0.88
432532--432580	9	5.2	9	87	7	71	20	2	0	77	0.87
433237--433290	27	2.0	27	85	0	72	55	14	5	24	1.61
436085--436128	3	14.7	3	100	0	88	65	0	0	34	0.93
436310--436355	17	2.6	17	81	15	58	41	0	4	54	1.20
436310--436353	18	2.5	18	85	10	56	40	0	4	54	1.21
436818--436948	54	2.4	54	87	3	174	29	22	17	29	1.97
442947--443053	54	2.0	55	88	1	162	32	18	17	30	1.95
446296--446456	55	2.9	55	93	0	270	36	11	16	35	1.86
446602--448321	81	21.3	81	90	1	2533	35	11	20	31	1.89
450979--451026	23	2.1	23	88	0	69	35	12	18	33	1.89
451452--451514	23	2.7	23	92	0	99	38	20	4	36	1.74
451100--453438	430	5.4	430	97	0	4398	39	12	7	40	1.71
451882--451944	23	2.7	23	87	0	90	36	22	4	36	1.75
452312--452374	23	2.7	23	92	0	99	38	20	4	36	1.74
452732--452804	23	3.2	23	80	0	83	42	19	2	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453170--453232	23	2.7	23	87	0	90	36	20	6	36	1.78
456075--456564	183	2.7	183	96	0	892	32	17	15	34	1.91
458525--458590	3	22.0	3	74	0	51	24	30	7	37	1.83
458560--458602	12	3.6	12	83	0	59	18	32	11	37	1.87
458556--458607	24	2.2	24	89	0	77	19	30	9	40	1.83
460069--461245	200	5.9	200	98	0	2219	31	17	14	36	1.91
461364--461412	19	2.6	19	93	0	80	57	10	2	30	1.43
463204--463269	33	2.0	33	87	0	96	22	46	0	30	1.52
463303--463367	21	3.1	21	90	0	94	16	29	12	41	1.85
465583--465625	20	2.3	18	85	14	61	20	16	11	51	1.75
465588--465648	20	3.1	19	79	9	68	18	14	11	55	1.68
465769--465815	20	2.3	20	89	10	78	17	17	10	55	1.69
465555--466027	181	2.6	182	90	1	727	26	17	13	42	1.86
466808--466865	27	2.1	28	84	9	75	24	1	17	56	1.50
466964--467004	16	2.8	14	82	13	55	43	0	2	53	1.13
466968--467001	16	2.1	16	94	0	59	44	0	2	52	1.16
473172--473247	36	2.1	36	85	7	100	47	1	3	47	1.29
478019--478116	47	2.1	46	81	11	110	31	14	21	32	1.93
485240--485673	42	10.5	42	77	6	339	29	17	20	32	1.96
485110--485374	135	1.9	137	90	2	417	30	17	21	30	1.96
485364--485673	126	2.5	126	84	1	390	28	17	20	33	1.95
485642--485696	20	2.8	20	94	0	92	21	27	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486117--486313	53	3.7	53	89	2	290	28	20	28	21	1.98
487010--487100	45	2.0	45	97	0	173	17	14	8	59	1.60
487775--487813	2	20.0	2	94	5	71	51	0	0	48	1.00
489923--490247	53	6.2	53	74	6	239	38	6	20	34	1.79
493856--493911	21	2.6	21	86	13	78	53	17	7	21	1.67
494855--495015	64	2.5	63	82	6	182	36	18	19	26	1.95
495694--495757	30	2.1	30	85	0	83	18	18	28	34	1.95
496684--496728	15	3.0	15	84	12	65	22	35	8	33	1.85
497599--497644	23	2.0	23	83	8	58	50	2	19	28	1.60
499350--499377	3	9.3	3	100	0	56	32	32	0	35	1.58
501190--501248	30	2.0	30	89	0	91	40	11	6	40	1.68
502446--502921	53	9.1	53	82	5	414	36	6	24	32	1.81
502465--502921	106	4.4	102	82	8	485	36	6	24	33	1.80
502466--502919	210	2.2	208	85	5	603	35	6	24	33	1.81
509772--509798	2	13.5	2	100	0	54	51	0	0	48	1.00
510565--510634	29	2.4	29	88	4	106	24	27	35	12	1.92
511229--511272	21	2.1	21	86	0	61	29	0	18	52	1.46
511249--511311	28	2.2	30	88	5	94	31	0	12	55	1.37
511223--511334	49	2.3	49	78	9	120	35	0	12	51	1.40
511778--511838	17	3.4	17	72	16	59	42	0	9	47	1.36
514544--514613	11	6.2	11	80	6	86	41	18	21	18	1.91
514544--514613	23	3.1	23	87	2	106	41	18	21	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514765--514876	29	3.9	29	92	0	170	19	25	37	16	1.93
520035--520086	14	3.8	14	74	5	52	71	0	3	25	1.03
528648--528706	14	4.3	14	77	8	59	67	3	3	25	1.21
528734--528795	29	2.2	29	80	13	67	61	1	6	30	1.31
529980--530014	14	2.4	15	85	9	54	5	14	42	37	1.69
530061--530106	22	2.1	22	84	15	60	65	2	0	32	1.05
530069--530106	19	2.0	19	85	10	51	65	2	0	31	1.06
530430--530658	113	2.0	113	82	5	275	31	19	13	34	1.91
530597--530744	61	2.4	61	94	2	253	33	18	14	33	1.91
530692--531236	111	4.9	113	84	2	706	28	18	14	38	1.90
531241--531473	76	3.1	76	95	1	412	34	21	19	24	1.96
532151--532271	22	5.5	22	98	0	224	41	14	11	33	1.81
532640--532781	50	2.8	50	97	0	266	27	23	12	36	1.91
534863--535079	114	1.9	114	93	0	371	30	20	15	33	1.94
537686--537737	2	26.0	2	100	0	104	50	0	0	50	1.00
540697--540750	14	3.8	14	85	2	63	51	9	14	24	1.71
542303--542360	28	2.2	26	84	6	71	60	1	5	32	1.29
543179--543240	29	2.2	28	81	16	76	62	3	4	29	1.31
544501--544535	14	2.4	15	85	9	54	8	14	40	37	1.76
544582--544627	22	2.1	22	84	15	60	65	2	0	32	1.05
544590--544627	19	2.0	19	85	10	51	65	2	0	31	1.06
546499--546591	20	4.6	20	86	2	78	34	21	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546499--546588	40	2.2	40	84	2	108	34	21	17	26	1.95
546521--546591	20	3.5	20	94	0	124	35	21	19	23	1.96
547611--547664	20	2.7	20	82	5	74	35	24	20	20	1.96
547656--547731	33	2.3	34	93	2	127	44	19	22	13	1.85
549284--549392	41	2.6	42	75	7	107	22	19	35	22	1.96
549882--550010	20	6.8	20	74	15	94	41	19	18	20	1.91
550023--550134	20	5.6	20	91	0	170	19	19	22	38	1.94
552015--552081	20	3.3	20	87	0	80	41	25	16	16	1.88
552453--552518	22	3.0	22	86	0	96	19	16	39	24	1.92
552700--552808	20	5.4	20	78	10	80	22	20	20	37	1.94
552715--552808	41	2.3	40	90	1	143	21	20	19	39	1.93
552805--552850	21	2.2	21	88	0	65	36	17	28	17	1.92
553091--553178	30	2.9	30	79	11	90	37	7	0	54	1.30
553124--553223	30	3.3	32	76	8	93	39	4	0	57	1.18
553290--553339	18	2.8	18	84	6	66	50	6	0	44	1.26
553258--553385	60	2.1	60	91	5	206	54	5	2	37	1.36
553290--553339	17	2.8	17	82	11	64	50	6	0	44	1.26
553312--553352	17	2.4	17	87	4	55	60	2	2	34	1.23
554228--555222	159	6.3	158	81	6	1037	50	5	18	26	1.67
555971--556024	26	2.1	26	93	3	92	46	7	22	24	1.77
562488--562554	34	1.9	34	82	14	84	20	11	19	47	1.81
563224--564510	650	2.0	639	88	2	1887	36	10	16	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569771--569848	37	2.1	38	80	9	88	48	3	5	42	1.43
570715--570784	34	2.0	35	91	2	115	27	22	24	25	2.00
576970--577035	31	2.1	31	94	0	114	33	13	30	22	1.93
579578--579655	31	2.5	30	83	6	102	24	24	14	37	1.92
583773--583817	21	2.1	21	95	0	81	22	26	24	26	2.00
584501--584535	18	1.9	18	94	0	61	31	34	20	14	1.92
584645--584688	23	1.9	23	90	0	70	27	27	27	18	1.98
586225--586266	21	2.0	21	95	0	75	26	28	21	23	1.99
586446--586505	29	2.0	31	90	6	97	41	16	6	35	1.75
589297--589366	34	2.1	32	86	5	95	21	32	15	30	1.94

Tables:   1   2   3   4   5   6