genome.fa.s7703.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007703.1 Hibiscus syriacus cultivar Beakdansim tig00109916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1017536

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 603 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589651--589692	21	2.0	21	95	0	75	26	28	21	23	1.99
589872--589930	29	2.0	31	90	6	95	42	16	5	35	1.71
593578--593804	39	6.1	38	73	12	168	45	11	6	37	1.65
593643--593833	39	5.0	38	77	5	161	46	9	5	38	1.60
593856--594017	39	4.1	39	76	7	164	42	11	6	39	1.67
593860--594009	81	1.9	78	86	4	210	42	11	5	41	1.63
594275--594440	58	2.9	58	88	1	226	42	13	7	36	1.73
594679--594837	45	3.6	44	78	5	167	37	13	6	42	1.69
595155--595186	16	2.0	16	93	0	55	25	9	0	65	1.22
597993--598022	15	1.9	16	93	6	53	63	0	3	33	1.11
603209--603285	3	25.7	3	94	0	136	66	0	0	33	0.92
604826--604856	2	15.5	2	100	0	62	51	0	0	48	1.00
607932--607983	19	2.7	19	90	0	86	38	11	0	50	1.39
610877--610926	24	2.2	24	82	13	61	30	0	6	64	1.18
613238--613318	22	3.7	22	91	0	126	22	44	12	20	1.85
613691--613793	53	1.9	54	96	2	190	12	17	23	46	1.82
613687--613795	20	5.8	20	77	12	106	11	17	22	47	1.80
613759--613802	20	2.2	20	91	0	70	11	13	20	54	1.69
613676--613814	73	1.9	73	80	2	163	18	16	20	43	1.87
615649--615693	21	2.2	21	92	4	74	51	22	13	13	1.75
615680--615733	20	2.7	20	88	0	90	38	24	22	14	1.91
615759--615846	40	2.4	37	76	14	92	19	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615777--615845	20	3.5	20	87	0	93	20	21	23	34	1.96
616363--616402	21	1.9	21	94	0	71	25	27	17	30	1.97
616369--616417	21	2.3	21	86	6	64	28	30	16	24	1.96
616411--616480	21	3.3	21	72	5	70	22	37	20	20	1.95
616387--616480	42	2.2	42	83	3	118	23	37	18	21	1.94
617869--617905	14	2.6	14	100	0	74	29	0	21	48	1.50
618039--618102	20	3.2	20	88	0	101	45	21	18	14	1.85
618141--618237	20	4.8	20	88	0	131	30	19	18	30	1.96
620469--620495	14	1.9	14	100	0	54	7	18	29	44	1.77
620695--620748	24	2.2	24	90	0	81	42	20	16	20	1.89
626627--626719	3	31.3	3	83	2	116	36	1	1	61	1.10
628328--628365	2	19.0	2	100	0	76	50	0	0	50	1.00
634208--634292	6	13.2	6	82	12	82	80	0	18	1	0.79
634211--634303	14	6.7	14	75	16	79	79	0	19	1	0.79
634208--634303	26	3.5	27	79	13	99	80	0	18	1	0.78
635796--635928	52	2.6	51	84	3	167	39	16	21	22	1.92
637398--638319	177	5.3	177	86	4	1280	31	16	20	31	1.94
637457--637743	87	3.3	87	63	19	214	32	16	21	29	1.95
638714--638760	23	2.0	23	83	0	58	46	0	2	51	1.13
639973--640019	24	2.0	24	83	8	60	57	12	2	27	1.47
643281--643324	20	2.2	20	84	4	63	65	0	15	18	1.27
649677--649710	17	2.1	16	88	5	50	76	0	8	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658946--658983	16	2.4	17	82	8	53	50	15	5	28	1.66
660495--660567	30	2.4	30	97	0	137	42	13	20	23	1.88
660527--660579	15	3.5	15	75	10	54	43	15	20	20	1.88
661174--661213	16	2.5	16	87	0	62	25	0	25	50	1.50
662029--662078	2	24.5	2	95	4	91	48	2	0	50	1.12
667591--667624	5	6.8	5	86	0	50	79	2	0	17	0.86
667596--667634	20	2.0	20	90	10	62	76	2	2	17	1.01
667856--667890	2	18.0	2	94	5	63	48	0	0	51	1.00
668947--669174	113	2.0	114	96	0	422	21	7	20	50	1.73
669495--669536	3	13.7	3	85	14	59	66	0	0	33	0.92
669495--669536	19	2.3	18	84	16	59	66	0	0	33	0.92
672993--673063	15	4.7	15	78	0	70	14	30	18	36	1.90
673005--673066	6	10.3	6	87	0	52	14	32	17	35	1.90
672993--673027	18	1.9	18	94	0	61	11	31	20	37	1.88
672999--673057	9	6.6	9	78	0	55	16	32	15	35	1.90
673416--673453	18	2.1	18	95	0	67	23	21	31	23	1.98
674961--675289	111	3.0	110	95	1	583	44	11	8	35	1.71
675351--675386	17	2.1	18	94	5	65	63	2	5	27	1.30
675913--675967	28	2.0	28	88	0	83	36	7	5	50	1.53
693135--693203	22	3.1	22	87	4	104	21	42	11	24	1.86
695604--695645	12	3.5	12	83	6	50	23	0	7	69	1.13
695814--695890	21	3.7	21	75	6	75	23	36	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697200--697232	13	2.4	14	95	5	59	30	0	21	48	1.50
697356--697440	20	4.2	20	78	0	98	36	22	18	22	1.95
697459--697497	20	2.0	20	89	0	60	28	23	15	33	1.95
700147--700180	12	2.8	12	90	0	50	14	0	29	55	1.40
700948--701099	20	7.6	20	75	12	82	34	12	21	31	1.91
701027--701083	21	2.7	21	100	0	114	29	8	24	36	1.86
700999--701096	21	4.8	21	86	6	105	31	12	24	31	1.92
711644--711677	13	2.6	13	100	0	68	11	14	32	41	1.82
716224--716258	10	3.5	10	84	0	52	8	2	25	62	1.38
716452--716500	19	2.7	17	84	9	53	26	20	28	24	1.99
717331--717376	24	2.0	24	87	12	69	56	26	2	15	1.50
720248--720323	21	3.5	22	78	5	91	25	25	25	25	2.00
721301--721351	19	2.7	19	85	8	70	25	15	35	23	1.94
721196--721353	65	2.5	63	87	3	210	27	16	25	30	1.97
727721--727760	21	1.9	21	85	10	55	35	10	2	52	1.48
729688--729868	64	2.8	63	83	3	218	27	17	26	29	1.97
729816--729866	19	2.7	19	85	8	70	25	15	35	23	1.94
729709--729868	65	2.5	65	86	3	216	27	16	26	30	1.97
729710--729917	65	3.2	63	79	14	210	27	17	25	30	1.97
737181--737221	2	20.5	2	100	0	82	48	0	0	51	1.00
739807--739870	24	2.7	25	72	18	73	76	3	1	18	1.00
741667--742074	85	4.8	84	83	4	480	25	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742201--742349	57	2.8	50	82	13	199	24	12	21	41	1.87
742248--742667	122	3.4	122	93	1	716	25	13	20	40	1.89
742304--742663	65	5.8	64	83	10	469	25	13	21	39	1.90
743789--743827	20	1.9	21	84	5	53	23	30	25	20	1.98
745886--745924	18	2.1	18	85	4	51	61	7	0	30	1.24
746318--746377	20	2.8	22	82	7	79	25	21	31	21	1.98
749114--749258	74	2.0	73	85	6	195	29	3	8	57	1.46
749140--749285	75	1.9	75	85	8	199	28	2	8	60	1.41
749888--749919	16	2.0	16	100	0	64	25	0	6	68	1.12
757221--757371	77	2.0	76	89	5	232	28	3	9	58	1.45
758032--758063	16	2.0	16	100	0	64	25	0	6	68	1.12
762858--763066	99	2.1	99	88	1	303	31	17	17	34	1.93
767058--767124	10	7.0	9	77	14	55	80	4	4	10	0.99
767063--767109	24	2.0	24	87	8	69	78	2	6	12	1.02
767387--767439	28	2.0	26	85	14	72	67	0	1	30	1.01
767356--767440	15	5.5	15	74	20	54	62	0	2	35	1.08
767388--767576	76	2.5	76	77	19	205	67	2	5	25	1.23
767533--767635	13	8.5	12	70	20	63	73	0	2	22	1.02
767535--767635	20	5.1	20	71	22	63	73	0	2	22	1.03
767539--767620	10	8.2	10	85	10	71	71	0	3	24	1.01
767533--767635	9	11.8	8	80	11	64	73	0	2	22	1.02
767533--767635	16	6.4	16	71	18	63	73	0	2	22	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773568--773613	22	2.1	22	100	0	92	17	28	19	34	1.94
779649--779720	17	4.2	17	80	3	72	40	9	13	36	1.78
791303--791349	13	3.6	13	82	0	58	38	17	19	25	1.92
792641--792790	65	2.3	64	81	3	167	27	16	23	32	1.96
795288--795349	21	2.8	22	73	4	63	27	25	24	22	2.00
800955--801004	21	2.4	21	89	0	73	18	16	28	38	1.91
808445--808486	7	5.9	7	85	2	57	42	0	0	57	0.99
808468--808493	11	2.4	11	100	0	52	38	0	0	61	0.96
811287--811561	5	54.6	5	94	4	392	40	0	24	35	1.56
811822--811894	18	4.1	18	80	0	83	45	2	19	32	1.64

Tables:   1   2   3   4   5   6