genome.fa.s7724.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007724.1 Hibiscus syriacus cultivar Beakdansim tig00109971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1221931

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 706 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027259--1027484	94	2.4	96	85	3	303	42	15	21	19	1.88
1027941--1028001	17	3.6	17	74	12	63	40	0	0	59	0.98
1027945--1028008	33	2.1	32	82	11	80	43	0	0	56	0.99
1027957--1028025	29	2.5	28	76	9	70	39	0	0	60	0.97
1030751--1030841	42	2.2	42	82	2	103	21	36	17	24	1.95
1030819--1030867	21	2.3	20	86	10	71	18	34	26	20	1.95
1030768--1030856	42	2.1	42	80	0	97	21	32	20	25	1.97
1031472--1031515	14	3.2	14	93	6	81	59	13	0	27	1.35
1031581--1031710	63	2.0	64	92	1	217	37	23	1	37	1.64
1031666--1031725	23	2.6	23	91	0	93	35	15	0	50	1.44
1031777--1032431	116	5.7	116	95	0	1143	31	23	24	21	1.98
1034204--1034347	72	2.0	72	100	0	288	27	16	6	48	1.72
1035336--1035431	26	3.5	26	77	12	77	46	0	2	51	1.12
1035399--1035437	20	2.0	20	94	0	69	51	0	0	48	1.00
1050074--1050109	18	2.1	18	89	5	56	58	11	25	5	1.54
1052720--1052757	15	2.5	15	100	0	76	47	39	13	0	1.42
1054995--1055053	29	2.0	29	100	0	118	23	13	13	49	1.78
1060516--1060824	43	7.3	42	77	4	221	25	16	24	32	1.96
1060577--1060761	85	2.2	84	82	0	208	24	18	23	32	1.97
1060816--1060978	44	3.7	44	89	2	240	26	18	20	33	1.96
1061293--1061366	21	3.5	21	79	0	76	2	33	17	45	1.63
1061368--1061396	12	2.5	12	94	5	51	0	37	27	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069908--1070060	20	7.7	20	69	18	86	35	26	14	22	1.93
1069908--1070059	60	2.5	61	74	12	152	35	26	14	23	1.93
1070012--1070079	18	3.5	19	84	8	75	32	23	13	30	1.93
1070216--1070254	16	2.5	15	84	8	51	28	5	0	66	1.12
1072449--1072602	77	2.0	77	94	0	272	27	20	12	38	1.90
1073419--1073533	21	5.5	19	72	16	86	23	20	34	21	1.96
1073419--1073539	42	2.9	42	81	8	156	24	19	33	21	1.97
1073896--1073989	21	4.5	21	72	7	84	29	36	14	19	1.92
1076070--1076121	22	2.4	22	83	0	68	25	15	40	19	1.90
1076244--1076324	20	4.0	20	87	6	117	17	11	23	48	1.79
1076318--1076362	20	2.2	20	96	0	81	20	20	22	37	1.94
1077098--1077286	42	4.6	40	69	14	100	34	16	14	33	1.90
1078631--1078727	42	2.3	42	80	7	99	35	26	9	28	1.87
1085398--1085513	58	2.0	58	96	0	214	23	25	11	40	1.87
1085694--1085728	16	2.2	16	100	0	70	42	5	5	45	1.51
1105065--1105103	12	3.2	12	96	3	69	2	15	0	82	0.79
1105054--1105103	24	2.0	25	85	11	68	6	16	0	78	0.95
1105473--1105588	6	19.3	6	77	3	90	30	58	2	8	1.41
1105513--1105588	15	5.3	15	81	9	104	31	57	0	10	1.32
1105570--1105655	39	2.2	39	87	0	118	32	54	1	11	1.44
1105500--1105622	27	4.7	27	77	6	92	31	56	1	10	1.43
1109107--1109149	17	2.5	18	81	11	54	53	4	0	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116022--1116067	24	1.9	24	90	0	74	32	13	28	26	1.93
1123252--1123306	26	2.2	25	87	9	76	34	16	3	45	1.65
1126042--1126093	25	2.3	23	87	12	72	23	40	0	36	1.55
1126718--1126758	18	2.3	18	86	0	55	2	29	19	48	1.61
1139241--1139282	12	3.5	12	81	9	50	59	9	19	11	1.59
1139737--1139795	30	2.0	30	90	6	93	32	8	11	47	1.70
1140187--1140572	183	2.1	183	92	2	643	45	9	3	42	1.51
1140698--1140726	15	1.9	15	100	0	58	17	6	27	48	1.72
1141094--1141143	24	2.1	24	88	0	73	40	8	10	42	1.68
1141095--1141342	121	2.1	118	87	5	356	36	11	12	39	1.79
1141211--1141530	137	2.3	139	87	3	475	35	10	13	41	1.77
1141339--1141395	29	1.9	29	85	3	78	35	7	12	45	1.69
1141450--1141604	29	4.7	34	71	22	118	39	7	12	41	1.70
1141313--1141732	204	2.1	202	92	1	698	36	8	12	41	1.75
1141681--1141750	29	2.4	29	90	2	104	31	5	14	48	1.67
1150025--1150526	120	4.3	117	78	7	442	26	19	15	39	1.91
1159375--1159427	20	2.7	20	100	0	106	24	33	20	20	1.97
1159592--1159639	20	2.4	20	100	0	96	50	20	4	25	1.66
1162176--1162274	45	2.2	46	92	5	166	32	19	16	32	1.94
1164697--1164864	56	3.0	56	83	6	182	35	11	19	33	1.88
1165080--1165258	68	2.6	68	85	6	238	30	15	24	29	1.96
1165096--1165280	68	2.7	68	82	2	149	31	15	24	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165212--1165689	81	5.9	81	90	1	690	37	11	22	28	1.89
1165212--1165689	161	3.0	162	90	1	708	37	11	22	28	1.89
1165662--1165716	28	2.0	28	88	0	83	47	7	16	29	1.73
1165853--1165889	2	18.5	2	100	0	74	51	0	0	48	1.00
1169018--1169059	18	2.4	17	77	18	50	66	11	2	19	1.34
1171721--1171889	59	2.8	60	78	7	166	31	19	7	41	1.78
1172014--1172226	60	3.5	61	78	8	204	43	5	20	30	1.75
1172133--1172237	29	3.6	28	71	17	79	47	4	13	34	1.64
1172145--1172258	60	1.9	60	84	10	153	50	4	10	35	1.57
1176331--1176398	31	2.2	31	86	5	93	25	8	11	54	1.65
1177350--1177420	31	2.3	31	90	0	106	53	15	11	19	1.72
1178761--1178804	17	2.5	17	81	3	52	36	18	11	34	1.86
1179982--1180025	16	2.7	16	86	10	54	72	0	9	18	1.10
1184688--1184762	8	9.4	8	88	0	105	25	12	29	33	1.92
1184700--1184762	4	15.8	4	79	0	72	25	14	30	30	1.95
1184688--1184766	16	4.9	16	93	0	131	25	11	30	32	1.91
1190411--1190441	12	2.5	12	94	5	53	80	19	0	0	0.71
1194523--1194562	21	1.9	21	89	0	62	15	32	25	27	1.95
1203222--1203275	21	2.6	21	78	0	63	16	14	46	22	1.84
1203419--1203533	41	2.8	42	80	5	117	27	22	20	29	1.98
1203603--1203833	83	2.8	83	83	0	284	31	19	16	32	1.94
1204464--1204518	20	2.7	21	88	5	94	27	34	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204875--1204950	31	2.4	30	80	20	93	34	13	22	30	1.92
1208079--1208144	31	2.1	31	84	15	84	34	12	19	33	1.89
1210594--1210639	20	2.3	19	89	10	74	54	10	17	17	1.70
1210760--1210806	20	2.4	19	82	10	67	53	10	17	19	1.72
1210769--1210811	20	2.3	19	88	11	63	51	11	16	20	1.75
1213015--1213079	21	3.1	21	80	6	69	40	15	29	15	1.88
1213113--1213178	33	2.0	33	90	0	105	28	0	48	22	1.51
1214973--1215021	19	2.6	19	93	0	80	30	2	10	57	1.43
1215140--1216306	198	5.9	198	98	0	2230	36	15	16	31	1.90
1215140--1216306	397	2.9	396	98	0	2239	36	15	16	31	1.90
1215140--1216306	595	2.0	595	98	0	2239	36	15	16	31	1.90
1217760--1217821	18	3.4	18	84	0	88	37	11	35	16	1.84
1217760--1217851	6	15.3	6	81	0	67	36	8	34	19	1.83
1217811--1217855	3	15.0	3	85	0	63	37	2	33	26	1.69
1217763--1217851	12	7.4	12	84	0	88	35	8	34	20	1.84
1217760--1217851	18	5.1	18	79	0	85	36	8	34	19	1.83
1219309--1220008	183	3.9	182	95	1	1246	35	14	16	33	1.89
1219309--1220008	362	1.9	363	95	0	1267	35	14	16	33	1.89

Tables:   1   2   3   4   5   6

The End!