genome.fa.s7741.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007741.1 Hibiscus syriacus cultivar Beakdansim tig00110004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1550271

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 830 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277643--277729	34	2.5	34	81	1	111	33	14	14	36	1.88
281474--281515	22	1.9	22	90	0	66	28	21	26	23	1.99
283610--283684	30	2.5	31	78	12	91	30	28	22	18	1.97
286517--286586	22	3.2	22	79	0	77	31	22	24	21	1.98
286644--286692	23	2.1	23	100	0	98	4	22	57	16	1.56
292220--292269	23	2.2	22	78	3	55	40	24	18	18	1.91
293321--293361	19	2.2	19	95	0	73	34	19	14	31	1.92
301377--301422	22	2.1	22	95	0	83	41	15	10	32	1.82
307674--307711	19	2.0	19	90	10	60	50	5	0	44	1.24
316038--316094	19	3.0	19	76	23	66	31	19	33	15	1.93
329817--329865	13	3.8	13	77	0	53	38	14	18	28	1.90
335289--335321	16	2.1	16	88	11	50	45	3	0	51	1.16
335363--335423	3	19.0	3	80	12	52	34	1	1	62	1.15
335364--335421	11	5.1	11	74	25	50	34	1	1	62	1.16
335373--335422	13	3.6	15	76	17	54	34	2	2	62	1.18
335364--335423	17	3.5	17	80	8	68	35	1	1	61	1.16
336796--336837	18	2.4	19	84	11	54	50	2	0	47	1.14
336929--336981	27	2.0	27	82	14	65	39	0	1	58	1.09
340911--340942	15	2.1	15	94	0	55	25	18	9	46	1.79
350658--351112	113	4.0	113	82	6	481	37	14	19	28	1.91
351412--351500	3	29.3	3	78	15	94	35	1	0	62	1.02
352762--352799	3	12.7	3	94	0	67	31	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356438--356844	186	2.2	189	90	2	640	31	13	21	33	1.91
356788--357020	126	1.8	126	85	1	324	24	18	24	33	1.97
358282--358318	12	3.2	11	88	11	56	37	0	0	62	0.96
361475--361656	59	3.1	59	84	6	210	31	21	4	42	1.74
372244--372354	56	2.0	56	83	1	141	34	22	23	19	1.97
373611--373657	11	4.0	11	86	5	58	23	19	4	53	1.63
374019--374096	26	3.0	27	82	12	94	44	0	1	53	1.08
373998--374152	62	2.5	64	92	6	257	40	0	1	57	1.10
374147--374208	19	3.3	19	78	15	58	37	1	0	61	1.06
392134--392165	15	2.1	15	100	0	64	21	15	31	31	1.95
394117--394331	80	2.7	81	84	1	279	35	13	22	28	1.92
402902--402947	23	2.0	23	82	0	56	28	21	28	21	1.99
422329--422388	29	2.0	31	90	6	97	35	6	16	41	1.75
422544--422585	21	2.0	21	95	0	75	23	21	28	26	1.99
422869--422938	34	2.1	32	89	5	104	31	15	31	21	1.95
429506--429566	30	2.0	30	93	0	104	24	13	29	32	1.93
438418--438446	12	2.4	12	100	0	58	17	24	0	58	1.38
441778--441874	21	4.6	21	90	0	149	9	29	37	23	1.86
447340--447378	18	2.0	18	85	14	51	0	51	7	41	1.31
452162--452191	11	2.8	11	95	5	53	40	6	10	43	1.64
457531--457639	39	3.0	36	87	5	130	28	29	21	21	1.98
457531--457639	18	5.9	18	84	7	139	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462183--462208	13	2.0	13	100	0	52	53	0	0	46	1.00
462504--462613	18	5.9	18	82	6	130	30	31	17	20	1.95
462500--462613	39	3.0	38	84	6	160	30	30	16	21	1.96
466497--466576	42	2.0	42	80	14	96	48	0	1	50	1.08
466558--466611	26	2.1	26	86	6	74	53	0	0	46	1.00
466588--466652	18	3.4	18	70	24	53	49	3	0	47	1.17
466892--466918	14	1.9	14	100	0	54	48	7	14	29	1.71
466921--466959	20	2.0	20	84	0	51	33	17	7	41	1.79
466933--466978	15	3.1	15	81	6	67	30	19	8	41	1.82
466957--466996	21	1.9	21	89	0	62	27	25	7	40	1.82
467304--467447	59	2.4	60	79	6	159	40	4	22	32	1.75
467754--467793	20	2.1	19	86	9	55	62	7	2	27	1.35
473425--473449	11	2.3	11	100	0	50	40	0	0	60	0.97
473768--473879	20	5.6	19	80	7	98	35	26	14	23	1.93
473769--473879	41	2.8	40	79	15	122	36	26	14	23	1.93
473872--474001	40	3.2	40	82	4	118	27	23	11	37	1.89
473937--474021	20	4.2	20	73	5	73	25	23	16	34	1.95
473894--474002	40	2.7	40	82	2	121	27	22	11	37	1.90
473932--474063	60	2.2	60	78	4	142	28	21	14	36	1.92
474047--474084	20	1.9	20	100	0	76	31	23	5	39	1.77
474851--474929	20	4.0	20	79	0	77	45	21	7	25	1.78
474933--474996	20	3.2	20	79	0	74	17	10	18	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474958--475043	34	2.5	34	86	3	120	19	12	18	48	1.80
474991--475030	20	2.0	20	85	9	55	17	15	17	50	1.79
475595--475737	60	2.4	60	83	2	171	37	13	22	26	1.92
475610--475744	20	6.8	20	69	9	87	39	14	22	23	1.91
475651--475779	40	3.2	40	86	4	152	34	14	23	27	1.94
476651--476681	2	15.5	2	100	0	62	48	0	0	51	1.00
478241--478316	38	2.2	35	81	13	86	14	9	35	40	1.78
480444--480497	21	2.7	20	80	5	72	22	20	22	35	1.96
488140--488251	10	11.1	10	74	18	65	80	0	14	4	0.92
488141--488256	21	5.6	20	74	15	85	80	0	14	4	0.92
488140--488259	41	2.9	39	75	9	114	79	0	15	5	0.95
489998--490053	2	28.0	2	100	0	112	50	50	0	0	1.00
490195--490499	54	5.8	53	77	5	260	33	9	14	41	1.79
490203--490499	53	5.6	53	79	4	233	33	10	14	41	1.80
490225--490499	106	2.6	104	81	6	304	32	9	15	42	1.80
490643--490680	18	2.1	18	90	0	58	31	21	23	23	1.98
490721--490762	21	2.1	19	83	16	50	30	16	4	47	1.67
491233--491871	136	4.7	134	81	6	660	35	16	21	26	1.95
493360--493416	23	2.5	24	77	8	64	17	5	10	66	1.40
494943--495134	36	5.2	36	89	2	258	34	13	16	35	1.88
496247--496632	192	2.0	193	98	1	747	41	21	18	18	1.91
500661--500808	71	2.0	74	87	3	212	36	14	15	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500661--500808	36	4.1	36	87	3	208	36	14	15	33	1.88
514175--514212	17	2.2	17	95	0	67	5	10	52	31	1.58
542486--542524	13	3.0	13	84	0	60	25	20	20	33	1.97
542430--542674	98	2.5	97	82	4	267	31	21	17	29	1.96
542593--542622	13	2.3	13	94	0	51	30	20	6	43	1.77
546133--546231	36	2.8	36	90	0	153	29	18	11	41	1.84
549156--549230	24	3.2	24	76	1	89	29	22	25	22	1.99
554028--554392	181	2.0	182	95	1	660	33	25	4	36	1.76
555257--555303	24	2.0	24	87	4	69	44	19	14	21	1.86
556710--556739	15	1.9	16	93	6	53	63	0	6	30	1.20
557954--557998	23	2.0	23	86	8	65	20	15	24	40	1.91
561490--561521	11	3.1	11	86	13	50	40	0	0	59	0.97
563778--564131	156	2.3	154	80	7	371	30	19	11	38	1.86
564034--564189	65	2.4	64	85	7	208	30	19	11	38	1.87
564409--564578	81	2.1	81	91	2	270	27	18	15	38	1.92
564581--565012	140	3.1	139	84	3	541	31	26	15	26	1.96
565310--565375	3	22.0	3	100	0	132	33	0	0	66	0.92
566510--566543	14	2.4	14	85	0	50	32	0	5	61	1.20
572406--572445	20	2.0	21	90	5	64	25	17	25	32	1.97
573404--573475	30	2.4	31	92	2	119	48	2	0	48	1.16
574092--574164	36	2.0	37	81	7	87	47	1	4	46	1.30
574144--574192	18	2.8	17	78	6	53	55	2	2	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574314--574351	20	1.9	20	88	0	58	21	26	10	42	1.85
574872--574927	29	2.0	28	86	10	78	58	7	14	19	1.58
575050--575106	22	2.7	21	75	2	60	43	0	21	35	1.52
580312--580349	19	2.0	20	89	5	60	26	2	21	50	1.62
588613--588681	34	2.1	33	83	8	86	72	1	2	23	1.06
589774--589851	41	1.9	40	89	7	122	62	1	2	33	1.17
589831--590110	2	144.5	2	68	21	143	54	5	1	38	1.30
589862--590093	39	5.9	38	71	21	117	54	4	1	39	1.30
589773--589940	6	27.5	6	69	18	73	60	2	1	35	1.23
589840--590117	116	2.4	115	79	14	268	55	5	1	38	1.30

Tables:   1   2   3   4   5   6   7