genome.fa.s7741.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007741.1 Hibiscus syriacus cultivar Beakdansim tig00110004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1550271

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 830 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590003--590096	31	2.9	31	79	9	91	54	6	0	39	1.26
589961--590108	70	2.1	70	82	9	185	54	6	0	39	1.30
589936--590116	39	4.7	38	74	21	146	54	6	1	38	1.33
595576--596144	44	13.1	44	64	10	139	30	19	20	29	1.97
595520--596394	130	6.7	131	85	5	1016	30	18	20	30	1.97
595525--596394	389	2.2	388	84	4	1121	30	19	20	30	1.97
596828--596966	29	4.6	30	79	15	160	35	10	22	31	1.88
596783--597103	35	9.6	34	75	17	155	36	12	21	29	1.90
596858--596995	63	2.1	66	86	6	194	34	12	21	31	1.90
596952--597086	34	3.8	37	85	7	163	38	14	20	25	1.91
596952--597181	71	3.2	71	76	8	209	38	13	18	30	1.88
596952--597149	36	5.5	35	77	8	134	38	13	18	29	1.88
597263--597560	148	2.0	150	96	3	550	42	10	18	28	1.82
597617--597680	32	2.0	32	90	0	101	31	28	15	25	1.96
598659--598732	18	4.5	17	72	19	50	8	16	1	74	1.12
598671--598697	14	1.9	14	100	0	54	11	14	0	74	1.08
598661--598716	23	2.3	24	79	14	62	8	16	1	73	1.17
603188--603226	19	2.1	19	90	4	62	17	12	35	33	1.88
603314--603343	3	10.0	3	100	0	60	33	0	0	66	0.92
603982--604019	19	2.1	19	85	14	53	21	21	31	26	1.98
604101--604155	3	18.3	3	92	7	94	65	0	0	34	0.93
604102--604170	21	3.3	22	88	8	99	60	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604101--604170	15	4.2	17	89	8	85	61	0	1	37	1.05
605327--605382	30	1.9	31	85	10	82	75	10	1	12	1.14
606064--606091	14	2.0	14	100	0	56	64	0	14	21	1.29
612505--612564	30	2.0	30	96	0	111	16	28	10	45	1.80
614292--614342	20	2.5	20	87	0	75	41	15	23	19	1.90
614366--614419	19	2.7	19	80	8	63	35	14	18	31	1.91
614775--615291	55	9.4	55	88	2	743	33	11	19	35	1.88
619332--619367	2	18.5	2	94	5	65	52	0	0	47	1.00
619358--619583	115	1.9	117	90	1	357	32	12	19	34	1.90
619703--619771	2	36.0	2	91	8	117	47	0	0	52	1.00
621544--621583	20	2.0	20	95	0	71	5	35	32	27	1.79
621931--621963	15	2.1	16	94	5	59	33	15	0	51	1.43
622411--622765	138	2.6	138	86	4	511	25	15	14	44	1.85
624810--624835	2	13.0	2	100	0	52	50	0	0	50	1.00
627709--627755	12	3.7	14	78	18	50	76	0	2	21	0.89
627721--627757	10	3.5	11	86	13	51	75	0	0	24	0.80
627894--627961	28	2.4	28	95	0	118	42	7	4	45	1.52
627828--628113	39	7.7	38	83	9	344	42	8	3	45	1.51
627922--628113	80	2.4	78	92	2	305	41	8	3	46	1.53
627841--628041	108	1.9	104	88	7	287	42	9	3	44	1.53
628083--628137	28	2.0	28	85	3	76	43	5	1	49	1.36
630550--630626	38	2.0	38	100	0	154	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632401--632451	20	2.5	20	93	0	84	33	25	21	19	1.97
632794--633039	79	3.1	79	86	1	314	39	12	21	26	1.89
633042--633243	60	3.4	59	89	2	293	35	12	20	32	1.90
633420--633447	14	2.0	14	100	0	56	28	7	35	28	1.84
633823--633856	2	17.5	2	93	6	61	52	0	0	47	1.00
638953--639075	61	2.0	60	98	1	237	22	20	21	34	1.96
642216--642283	33	2.1	33	94	0	118	36	25	2	35	1.71
643386--643415	15	2.0	15	100	0	60	33	26	0	40	1.57
644446--644549	23	4.8	22	76	10	99	30	20	25	24	1.98
656137--656195	22	2.5	23	86	8	84	76	0	3	20	0.93
656131--656195	15	4.3	15	77	19	64	76	0	3	20	0.91
656252--656324	38	2.0	37	83	5	94	45	8	1	45	1.42
656299--656356	31	2.0	28	83	16	73	43	10	1	44	1.48
656273--656458	69	2.8	64	85	11	239	44	9	2	44	1.47
656299--656364	29	2.3	28	87	5	96	43	12	1	42	1.51
656273--656458	70	2.8	66	85	9	252	44	9	2	44	1.47
656364--656421	28	2.1	27	87	12	82	43	6	3	46	1.47
656364--656425	30	2.1	29	85	11	81	43	6	3	46	1.45
656374--656431	26	2.1	27	84	12	75	48	5	1	44	1.35
656310--656498	35	5.2	37	74	19	150	44	8	2	44	1.48
656480--656512	2	16.5	2	100	0	66	48	0	0	51	1.00
656267--656494	69	3.3	65	80	16	212	44	8	2	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656446--656554	52	2.1	50	90	8	175	44	5	3	45	1.44
658531--658559	12	2.3	13	94	5	51	68	0	3	27	1.05
658638--658666	4	7.2	4	100	0	58	75	0	0	24	0.80
660419--661522	84	13.1	84	85	0	1256	24	18	21	35	1.96
662339--662530	95	2.0	95	85	4	262	31	15	16	36	1.90
665102--665147	8	5.6	8	82	5	56	80	0	4	15	0.86
665102--665166	8	8.0	8	77	13	53	73	0	4	21	1.00
665137--665169	16	2.1	16	100	0	66	63	0	6	30	1.18
667282--667348	25	2.7	24	88	9	98	11	16	1	70	1.24
667369--667937	262	2.2	262	86	5	771	35	16	14	33	1.89
673977--674004	4	7.0	4	100	0	56	50	0	25	25	1.50
676281--676321	2	20.5	2	90	9	66	48	0	2	48	1.14
676401--676560	87	1.8	87	82	2	205	30	18	21	30	1.97
676549--676584	13	2.8	13	87	12	56	36	8	19	36	1.82
689265--689312	14	3.3	14	75	11	51	47	0	14	37	1.44
689263--689312	8	6.5	8	75	9	50	48	0	14	38	1.44
690631--690672	21	2.0	21	90	0	66	40	19	11	28	1.87
690642--690716	21	3.5	21	75	10	62	40	10	14	34	1.81
692109--692276	43	3.9	42	85	4	203	23	11	25	38	1.89
692159--692302	43	3.3	43	86	1	119	23	15	24	36	1.94
692127--692307	86	2.1	85	78	6	186	23	13	24	38	1.91
692320--692489	44	3.9	44	73	4	157	28	17	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692342--692489	44	3.4	44	72	5	158	28	15	22	33	1.94
695893--695973	42	1.9	43	87	2	119	32	20	11	35	1.88
697624--697751	42	3.1	42	82	4	125	29	19	17	33	1.95
702371--702398	12	2.3	12	100	0	56	17	46	14	21	1.84
707367--707637	148	1.8	147	88	2	418	32	21	12	34	1.90
717322--717359	20	1.9	20	88	0	58	26	34	26	13	1.93
716680--718055	689	2.0	689	99	0	2734	33	13	16	35	1.89
718011--718071	20	2.9	20	85	7	59	24	32	26	16	1.96
725313--725347	14	2.5	14	100	0	70	31	20	48	0	1.50
732245--732700	135	3.4	134	83	2	572	29	17	17	34	1.94
735179--735236	23	2.7	20	75	17	62	31	18	15	34	1.93
735721--735753	12	2.6	13	90	4	50	36	12	6	45	1.66
737503--737536	12	2.7	13	86	9	52	44	8	5	41	1.60
738781--738826	3	15.7	3	90	4	76	34	0	0	65	0.93
738783--738822	20	2.0	20	95	0	71	32	0	0	67	0.91
738785--738834	23	2.2	23	85	0	64	40	0	0	60	0.97
739204--739245	15	2.6	16	82	17	52	33	4	0	61	1.17
739625--739692	34	1.9	34	82	5	82	27	2	5	63	1.32
745750--745779	13	2.3	13	94	0	51	46	0	3	50	1.18
747017--747143	63	2.0	62	82	11	152	28	20	18	32	1.96
748076--748158	5	16.4	5	74	16	66	75	0	6	18	0.99
748077--748158	33	2.5	32	80	11	94	76	0	6	17	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748077--748168	36	2.6	35	80	17	95	76	0	7	16	1.01
748076--748158	43	2.0	42	82	11	102	75	0	6	18	0.99
753007--753481	238	2.0	235	95	4	848	23	30	16	30	1.96
755509--755782	137	2.0	136	97	2	514	17	29	20	32	1.96
756434--756481	23	2.1	23	84	0	60	37	12	14	35	1.84
756950--757022	23	3.2	23	88	0	101	38	19	5	36	1.75
757377--757423	21	2.2	21	85	7	60	38	23	4	34	1.74
760168--762905	181	15.2	183	95	2	4848	33	16	14	35	1.90
760168--762905	363	7.6	365	95	2	4783	33	16	14	35	1.90
763075--763104	16	1.9	16	93	6	53	63	16	0	20	1.31

Tables:   1   2   3   4   5   6   7