genome.fa.s7741.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007741.1 Hibiscus syriacus cultivar Beakdansim tig00110004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1550271

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 830 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1351833--1351920	3	28.7	3	79	6	88	30	6	0	62	1.21
1359429--1359458	2	15.0	2	100	0	60	50	0	0	50	1.00
1363272--1363318	12	3.9	12	94	0	76	2	44	0	53	1.12
1363271--1363322	15	3.5	15	81	5	52	1	44	0	53	1.11
1365419--1365468	20	2.5	20	96	0	91	22	10	20	48	1.79
1365856--1365908	20	2.6	21	85	8	74	24	16	13	45	1.83
1378662--1378753	45	2.0	45	100	0	184	56	10	6	26	1.58
1379203--1379252	2	24.5	2	95	4	91	48	0	2	50	1.12
1380419--1380443	12	2.1	12	100	0	50	24	16	44	16	1.86
1392770--1392814	17	2.6	18	82	13	58	33	26	22	17	1.96
1396927--1396966	19	2.1	19	100	0	80	32	25	5	37	1.77
1404205--1404330	66	1.9	66	83	0	162	35	23	19	21	1.96
1411422--1411528	46	2.3	46	85	9	137	34	9	22	33	1.86
1422740--1422778	19	2.1	19	85	0	51	56	7	2	33	1.41
1424955--1425030	29	2.5	29	72	18	66	56	1	1	40	1.16
1431743--1431773	15	2.1	15	93	0	53	83	0	0	16	0.64
1433276--1433317	17	2.5	17	76	3	50	54	0	0	45	0.99
1433338--1433388	26	2.0	26	100	0	102	25	31	7	35	1.85
1433340--1433382	12	3.4	12	77	22	52	20	32	6	39	1.80
1434389--1434449	16	3.6	16	87	12	86	42	11	24	21	1.86
1436568--1436679	29	3.9	29	97	0	206	20	43	27	8	1.80
1436686--1436766	30	2.7	30	88	0	126	23	45	19	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437396--1437460	28	2.3	29	91	2	105	33	0	12	53	1.38
1437426--1437527	41	2.3	46	78	9	115	39	0	10	49	1.45
1440204--1440234	10	2.9	11	90	9	55	38	0	19	41	1.51
1440151--1440286	60	2.3	60	96	2	247	38	0	16	45	1.47
1441012--1441064	12	4.3	12	84	11	63	52	16	0	30	1.44
1441099--1441219	41	3.0	39	76	15	122	47	10	0	42	1.38
1441112--1441219	41	2.6	42	81	8	125	48	10	0	41	1.37
1441112--1441247	41	3.3	40	75	12	116	47	10	0	41	1.43
1441283--1441321	16	2.3	18	86	8	55	56	5	0	38	1.22
1441532--1441637	49	2.2	49	93	5	182	22	18	37	20	1.94
1441672--1441795	29	4.3	29	96	0	221	23	32	30	13	1.93
1441782--1441853	32	2.2	32	90	0	117	8	30	30	30	1.87
1441868--1441905	19	2.0	19	100	0	76	10	21	36	31	1.87
1444681--1444782	29	3.6	29	82	2	125	47	16	7	28	1.75
1444783--1444838	13	4.3	13	100	0	112	14	23	46	16	1.83
1452088--1452189	29	3.6	29	78	7	118	46	17	9	26	1.79
1452192--1452219	13	2.2	13	100	0	56	14	25	42	17	1.87
1452196--1452238	18	2.4	18	92	0	68	11	25	46	16	1.80
1453573--1453610	15	2.5	15	87	8	51	42	10	0	47	1.38
1453462--1453874	139	3.0	139	85	6	509	44	11	11	31	1.77
1454072--1454128	26	2.1	27	80	3	62	64	5	8	21	1.41
1454134--1454342	113	1.8	113	89	0	328	57	8	10	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1454489--1454529	22	1.9	21	85	5	55	39	0	24	36	1.56
1454625--1454691	28	2.4	28	82	9	75	61	7	7	23	1.49
1455564--1455597	3	11.3	3	100	0	68	32	0	0	67	0.91
1456557--1456596	20	2.0	21	85	5	55	35	12	5	47	1.63
1460782--1460807	2	13.0	2	100	0	52	50	0	0	50	1.00
1461068--1461109	22	2.0	21	95	4	75	85	0	11	2	0.68
1461066--1461106	17	2.3	19	91	8	68	85	0	12	2	0.70
1461074--1461200	53	2.4	53	79	7	136	74	2	19	3	1.09
1461154--1461222	16	4.5	14	74	20	50	72	1	24	1	1.01
1461157--1461219	33	1.9	33	81	12	76	71	1	25	1	1.04
1463896--1464032	36	3.8	36	74	7	127	23	20	13	42	1.88
1463911--1464174	138	1.9	138	80	7	304	26	18	12	42	1.86
1464459--1465301	139	6.2	140	81	5	854	36	17	21	25	1.94
1465323--1465426	41	2.5	42	85	4	131	31	23	18	26	1.97
1465323--1465429	42	2.6	41	86	4	135	31	23	17	27	1.97
1465422--1465452	16	1.9	16	93	0	53	29	29	16	25	1.96
1465691--1465737	17	2.8	17	96	0	85	57	0	0	42	0.98
1468619--1469791	214	5.5	214	90	2	1581	32	17	15	33	1.92
1469270--1469376	42	2.6	41	77	5	117	29	21	22	26	1.99
1468619--1469791	430	2.7	428	88	2	1651	32	17	15	33	1.92
1470567--1470888	125	2.6	125	85	1	421	22	27	16	34	1.95
1480383--1480407	13	1.9	13	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1492083--1492122	20	2.0	21	85	5	55	35	10	5	50	1.58
1494350--1494385	18	2.1	18	94	5	65	44	5	0	50	1.25
1494354--1494471	13	7.9	15	73	14	68	44	5	5	43	1.53
1494351--1494401	18	2.8	17	82	11	57	45	5	1	47	1.38
1494890--1495059	2	87.0	2	71	17	108	48	2	4	44	1.34
1494893--1494989	25	3.9	24	79	4	77	51	2	3	43	1.29
1495158--1495252	48	2.0	49	89	2	147	48	7	9	34	1.64
1495413--1495486	37	2.1	36	87	5	105	41	9	9	39	1.70
1495414--1495581	57	2.9	55	74	10	131	41	7	9	41	1.66
1496214--1496250	14	2.5	15	87	12	51	48	10	16	24	1.77
1496815--1496863	22	2.2	22	96	0	89	14	12	34	38	1.83
1497010--1497078	29	2.4	28	87	4	93	42	20	5	31	1.76
1503040--1503076	14	2.5	16	83	16	53	51	10	13	24	1.73
1503820--1503887	29	2.3	30	87	7	104	44	17	4	33	1.69
1503832--1503889	29	2.0	29	96	0	107	43	13	5	37	1.67
1503890--1503926	17	2.2	17	90	0	56	13	21	43	21	1.87
1503896--1503950	22	2.5	23	79	8	69	10	18	49	21	1.78
1504751--1504792	22	2.0	21	86	9	59	35	4	9	50	1.56
1504779--1505059	65	4.3	63	75	13	207	44	4	2	49	1.34
1504804--1504907	21	4.9	21	70	16	79	48	5	1	44	1.38
1504845--1505054	31	6.6	31	71	18	110	45	2	1	50	1.27
1504974--1505085	15	7.5	14	73	17	84	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504973--1505056	6	15.2	6	77	19	60	45	0	1	53	1.08
1504772--1505054	131	2.2	124	79	10	288	44	4	2	48	1.34
1504997--1505084	29	3.1	29	80	11	94	46	0	1	52	1.08
1505753--1505828	13	5.9	14	69	18	67	48	14	7	28	1.72
1505749--1505826	25	3.1	25	90	0	120	48	14	8	28	1.73
1505760--1505838	25	3.3	23	81	13	81	48	12	6	32	1.67
1506385--1506424	11	3.5	11	83	6	53	40	7	5	47	1.54
1506607--1506657	23	2.2	24	92	3	86	49	7	0	43	1.32
1507938--1507982	23	2.0	23	95	0	81	40	31	8	20	1.83
1508902--1508984	29	2.8	29	90	1	130	44	8	14	32	1.75
1512352--1512381	15	2.0	15	93	0	51	20	0	23	56	1.42
1513666--1513748	29	2.8	29	92	1	139	43	9	14	32	1.78
1515040--1515345	157	1.9	158	97	0	587	34	13	23	28	1.93
1516886--1517118	118	2.0	117	82	2	279	33	12	16	36	1.87
1526480--1526574	41	2.3	41	98	0	181	27	21	18	32	1.97
1538596--1538666	7	10.4	7	68	17	51	67	0	1	30	0.99
1538596--1538652	19	2.7	21	79	12	64	66	0	0	33	0.92
1538622--1538669	12	3.5	13	78	15	53	68	0	2	29	1.01
1538612--1538654	14	2.9	15	86	10	61	67	0	0	32	0.91
1538596--1538669	28	2.5	28	82	12	85	67	0	1	31	0.99
1538655--1538695	21	2.0	21	90	9	66	58	4	9	26	1.50
1538652--1538713	17	3.3	18	76	20	56	61	3	8	27	1.40

Tables:   1   2   3   4   5   6   7

The End!