genome.fa.s7770.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007770.1 Hibiscus syriacus cultivar Beakdansim tig00110050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1450453

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204245--204325	35	2.3	36	93	2	137	16	16	13	54	1.72
204663--205132	6	79.0	6	92	6	807	66	0	0	33	0.92
205331--205399	30	2.3	30	100	0	138	49	0	0	50	1.00
205811--205875	33	2.0	33	84	6	87	46	16	13	23	1.83
206234--206333	23	4.3	23	93	1	164	15	24	25	36	1.94
207772--207837	19	3.8	19	66	25	56	54	16	12	16	1.71
207775--207848	31	2.4	31	100	0	148	55	14	13	16	1.70
208483--208599	37	3.1	37	75	15	116	41	5	10	43	1.61
208533--208674	75	1.9	75	81	7	171	41	4	8	45	1.54
208804--208858	22	2.5	22	82	8	58	27	1	3	67	1.17
209849--209875	4	6.8	4	100	0	54	22	0	0	77	0.76
210651--210692	10	4.1	10	90	3	66	45	0	2	52	1.13
211865--211934	3	23.0	3	77	13	56	30	0	0	70	0.88
211870--211931	8	6.9	8	73	22	52	30	0	0	69	0.89
211979--212080	33	3.1	33	88	2	143	44	17	9	28	1.81
211989--212096	33	3.2	32	85	3	126	40	15	12	31	1.84
212428--212515	39	2.3	38	77	14	99	29	2	1	67	1.10
216098--216859	110	7.0	109	89	3	1074	34	23	17	24	1.96
216966--217732	84	9.3	83	78	5	748	31	23	19	25	1.98
216961--217732	248	3.1	249	89	2	1117	31	24	19	25	1.98
218078--218133	15	3.9	14	82	15	62	28	0	0	71	0.86
218076--218130	20	2.8	19	82	15	67	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218180--218250	33	2.2	33	94	0	124	40	21	9	28	1.85
219792--219818	4	6.8	4	100	0	54	22	0	0	77	0.76
220602--220644	10	4.1	10	91	8	68	46	0	2	51	1.13
221827--221899	6	11.5	6	79	16	51	30	0	0	69	0.88
221827--221899	23	3.1	23	77	13	62	30	0	0	69	0.88
221835--221899	17	3.3	18	82	18	69	30	0	0	69	0.89
221944--222045	33	3.1	33	88	2	143	44	17	9	28	1.81
221954--222061	33	3.2	32	85	3	126	40	15	12	31	1.84
226067--226828	110	7.0	109	89	3	1074	34	23	17	24	1.96
226937--227701	84	9.2	83	78	7	705	31	23	19	25	1.98
226930--227701	248	3.1	249	89	2	1108	31	23	19	25	1.98
228044--228102	25	2.4	24	79	20	77	32	0	0	67	0.91
228153--228223	33	2.2	33	94	0	124	40	21	9	28	1.85
235307--235345	14	2.7	15	84	4	53	74	0	5	20	1.01
235372--235537	38	4.5	36	78	11	158	43	4	4	46	1.46
236125--237265	164	6.9	164	94	1	1831	24	20	23	31	1.98
240653--240698	19	2.4	19	92	0	74	67	6	13	13	1.41
243835--244002	39	4.5	37	74	14	139	44	4	4	46	1.45
243836--244002	38	4.5	36	77	12	151	43	4	4	46	1.45
247014--247054	21	2.0	21	90	0	64	43	0	14	41	1.45
254945--255099	78	2.0	78	96	0	283	20	21	24	33	1.97
256773--256800	14	2.0	14	100	0	56	28	28	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258230--258286	20	2.9	19	71	7	51	29	19	21	29	1.97
258454--258494	21	1.9	22	85	5	57	29	21	2	46	1.64
261486--261534	16	3.2	15	85	5	55	6	6	4	83	0.90
261566--261607	21	2.0	22	85	4	59	57	0	14	28	1.38
262268--262370	51	2.0	51	84	0	134	48	7	3	39	1.50
265080--265208	65	2.0	66	90	4	208	32	6	13	47	1.69
269380--269424	21	2.1	21	83	0	54	20	24	26	28	1.99
269388--269432	21	2.1	21	87	0	63	22	17	31	28	1.97
272058--272132	35	2.1	35	82	0	87	33	2	18	45	1.64
278203--278262	29	2.2	26	80	11	66	50	0	5	45	1.23
282606--282780	51	3.4	52	88	3	239	25	12	15	47	1.79
282932--282983	25	2.1	25	88	0	77	28	17	28	25	1.97
289506--289556	22	2.3	22	89	0	84	19	47	17	15	1.83
289922--289972	20	2.5	20	100	0	102	17	15	17	49	1.81
290191--291148	477	2.0	481	97	0	1825	27	14	20	36	1.92
291859--291900	16	2.6	16	88	0	66	33	30	26	9	1.88
292166--292218	21	2.5	21	84	0	70	20	13	32	33	1.91
292290--292341	21	2.5	21	90	0	77	21	23	26	28	1.99
292437--292478	12	3.5	12	80	6	50	26	4	4	64	1.33
292624--292718	21	4.6	21	90	7	149	22	32	20	25	1.97
292623--292718	41	2.3	42	89	5	151	21	33	19	25	1.97
294363--294398	18	2.0	18	94	0	63	19	2	22	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296323--296370	18	2.7	18	78	12	53	39	16	8	35	1.79
296657--296710	24	2.2	24	90	0	81	40	18	18	22	1.91
297461--297498	16	2.5	15	84	12	51	65	0	2	31	1.06
297654--297858	40	5.2	40	71	12	129	33	12	23	31	1.91
297725--297765	20	2.0	20	86	9	57	43	9	21	24	1.83
297735--297797	19	3.4	19	79	18	71	34	14	26	23	1.93
297810--297878	21	3.3	20	85	4	84	26	13	27	33	1.93
297905--297955	20	2.5	20	80	6	57	23	9	29	37	1.87
300757--300825	22	3.2	22	89	2	104	18	18	30	31	1.96
300782--300874	40	2.3	40	83	3	125	18	21	31	29	1.97
307120--307241	22	5.7	22	80	7	117	18	20	30	30	1.97
307119--307258	40	3.4	40	81	4	145	18	20	30	30	1.96
307142--307259	62	2.0	58	85	6	155	16	19	32	31	1.94
308441--309346	459	2.0	446	96	3	1679	29	15	18	36	1.91
311089--311150	24	2.6	24	84	5	72	25	17	22	33	1.96
315980--316067	44	2.0	44	95	4	160	50	11	4	34	1.59
320076--320162	32	2.8	30	70	20	79	32	19	17	31	1.95
323161--323254	29	3.2	29	64	14	66	32	14	14	37	1.88
325134--325181	19	2.5	19	80	12	53	47	2	0	50	1.12
325227--325271	13	3.4	14	81	9	58	62	6	4	26	1.39
326261--326313	21	2.5	21	84	0	70	20	26	18	33	1.96
326303--326548	20	12.3	20	93	0	377	39	18	19	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327214--327267	24	2.2	24	90	0	81	22	18	18	40	1.91
329678--329771	20	4.7	20	81	2	100	35	21	21	22	1.96
329678--329771	40	2.3	40	83	3	118	35	21	21	22	1.96
329776--329862	19	4.8	19	79	16	112	45	18	21	13	1.84
329743--329862	52	2.3	53	88	2	179	44	19	22	14	1.86
329975--330011	14	2.6	14	86	0	56	48	21	0	29	1.50
331368--331454	21	4.1	21	72	0	75	22	18	36	21	1.95
331934--332002	20	3.5	20	86	4	86	39	23	17	20	1.92
332041--332087	20	2.3	20	85	0	58	40	21	14	23	1.90
332113--332234	34	3.4	34	80	12	154	18	21	19	40	1.92
332134--332237	20	5.5	20	81	13	130	21	20	20	38	1.94
332096--332237	74	1.9	73	88	1	212	19	21	19	39	1.93
334104--334177	20	3.7	20	85	0	85	43	24	18	13	1.86
334203--334249	20	2.3	20	88	0	67	21	19	23	36	1.95
334839--334931	20	4.7	20	91	0	141	20	19	21	38	1.93
334928--334973	21	2.2	21	88	0	65	36	17	28	17	1.92
338081--338609	266	2.0	266	93	0	896	38	5	15	39	1.72
340004--340041	19	2.0	19	89	0	58	42	0	10	47	1.38
342468--342501	16	2.1	17	88	5	52	44	5	14	35	1.70
353368--353414	23	2.0	23	95	0	85	34	8	27	29	1.87
355212--355256	23	2.0	23	95	0	81	42	6	31	20	1.77
363203--363229	14	1.9	14	100	0	54	14	14	22	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369113--369179	20	3.4	20	72	12	75	22	1	14	61	1.42
369118--369317	40	5.1	40	76	13	211	23	3	18	55	1.57
369059--369329	116	2.4	113	88	2	398	23	4	18	53	1.64
370215--370245	16	1.9	16	93	0	53	32	0	3	64	1.09
371624--371695	20	3.5	21	76	16	53	15	4	2	77	1.03
372687--372813	51	2.5	50	87	1	164	16	34	30	18	1.93
372924--372964	10	4.1	10	84	12	57	31	29	0	39	1.57
378421--378465	21	2.1	21	87	0	63	31	28	24	15	1.96
380285--380329	23	2.0	23	86	0	63	20	26	26	26	1.99
380483--380543	32	1.9	32	83	12	81	31	3	21	44	1.68

Tables:   1   2   3   4   5   6   7   8