genome.fa.s7770.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007770.1 Hibiscus syriacus cultivar Beakdansim tig00110050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1450453

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837801--838106	83	3.7	83	80	2	283	36	17	14	31	1.90
838955--839008	24	2.2	24	100	0	108	33	11	7	48	1.67
838955--839020	24	2.8	24	92	0	96	33	9	6	51	1.58
841633--841683	23	2.2	23	79	6	59	33	9	25	31	1.88
841667--841715	25	2.0	25	100	0	98	38	20	8	32	1.82
842410--842442	3	11.0	3	87	12	50	36	0	0	63	0.95
842847--842900	2	27.0	2	100	0	108	50	0	0	50	1.00
843846--844011	78	2.1	78	98	0	323	32	5	9	52	1.57
845168--845217	17	3.1	17	68	26	54	52	22	6	20	1.68
845518--845559	20	2.0	20	86	9	57	38	0	26	35	1.57
848676--848720	2	22.5	2	100	0	90	48	0	0	51	1.00
851291--851386	40	2.4	40	85	0	129	55	16	4	23	1.59
854858--854924	32	2.1	32	94	0	116	16	31	25	26	1.96
859648--859766	36	3.5	34	80	11	127	25	17	8	48	1.75
862244--862323	37	2.2	37	83	0	115	40	17	13	28	1.88
862821--862865	11	4.4	11	72	16	51	33	2	0	64	1.06
863033--863087	19	2.7	19	78	18	58	25	5	0	69	1.10
863064--863109	13	3.4	14	79	11	51	23	4	0	71	1.03
864395--864431	19	1.9	19	89	10	58	8	24	0	67	1.17
867755--867802	14	3.4	14	82	11	62	81	4	14	0	0.84
867751--867815	27	2.3	29	81	5	80	81	4	12	1	0.91
868410--868464	22	2.5	22	100	0	110	36	27	12	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868877--868913	18	2.0	19	89	5	58	18	2	32	45	1.64
868914--869130	119	1.8	119	97	0	416	35	18	11	33	1.88
869205--869260	22	2.5	22	97	0	103	35	25	12	26	1.91
869673--869709	18	2.0	19	89	5	58	18	2	32	45	1.64
868330--870597	796	2.9	796	97	1	4249	34	17	15	32	1.91
869710--869926	119	1.8	119	100	0	434	35	18	11	34	1.88
870448--870484	18	2.0	19	89	5	58	18	2	32	45	1.64
870965--871904	106	8.8	106	89	1	1366	35	24	17	22	1.95
871844--871962	58	2.1	58	98	0	229	34	26	21	16	1.95
871632--872172	270	2.0	270	94	0	956	34	25	18	21	1.96
871743--872066	164	2.0	164	94	0	567	35	25	19	20	1.96
871313--872487	588	2.0	588	92	0	1929	34	24	17	22	1.96
871420--872384	482	2.0	482	94	0	1696	34	25	18	22	1.96
871526--872280	376	2.0	376	92	0	1267	34	25	18	21	1.96
871902--872542	106	6.0	106	91	0	1014	34	25	18	21	1.96
877106--877210	37	2.8	37	92	0	165	40	16	13	30	1.86
877650--877704	19	2.7	19	78	18	58	27	3	0	69	1.05
877685--877726	13	3.2	14	83	12	54	26	2	0	71	0.98
878395--878470	15	5.3	15	66	15	61	46	1	0	52	1.08
878429--878497	33	2.1	33	89	2	104	43	0	0	56	0.99
878392--878508	55	2.1	57	81	9	143	47	1	0	50	1.11
879195--879246	3	17.3	3	100	0	104	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882551--882596	2	23.0	2	100	0	92	50	0	0	50	1.00
882989--883046	17	3.4	17	66	4	53	58	5	0	36	1.20
882981--883127	35	4.2	35	87	0	206	57	4	2	35	1.32
883006--883064	18	3.3	18	66	4	57	62	5	0	32	1.17
883146--883207	27	2.4	25	84	10	81	51	6	3	38	1.44
889866--889938	2	37.0	2	97	2	139	50	0	0	49	1.00
892097--892141	21	2.1	21	100	0	90	42	22	8	26	1.83
896319--896399	23	3.5	23	89	0	117	49	18	18	13	1.79
898972--899014	22	2.0	21	82	13	52	53	27	0	18	1.45
903120--903158	19	2.1	19	95	0	69	20	38	15	25	1.92
903102--903264	64	2.6	63	82	5	195	30	26	15	28	1.96
903236--903284	19	2.6	19	84	9	57	24	30	18	26	1.98
903102--903283	64	2.8	62	78	12	183	29	26	15	28	1.96
909074--909154	24	3.6	22	77	14	85	24	25	22	27	2.00
911664--911703	21	1.9	21	94	0	71	32	30	15	22	1.94
911729--911767	19	2.1	19	95	0	69	20	38	15	25	1.92
911664--911893	64	3.5	64	80	11	215	30	26	16	26	1.96
911845--911893	19	2.6	19	84	9	57	24	30	18	26	1.98
912876--912910	14	2.6	13	90	4	52	25	0	28	45	1.54
912878--912910	13	2.4	14	90	5	50	24	0	30	45	1.53
920393--920483	31	2.9	31	76	0	92	28	9	4	57	1.51
920831--920880	26	1.9	26	91	0	82	22	24	32	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921492--921530	18	2.2	18	95	0	69	43	10	2	43	1.52
922124--922156	15	2.1	16	88	5	50	54	9	0	36	1.32
922952--922983	16	2.0	17	88	11	50	43	3	0	53	1.16
927467--927556	44	2.0	46	84	6	121	28	8	20	42	1.82
930174--930213	19	2.1	19	100	0	80	37	10	15	37	1.80
934032--934106	22	3.3	23	80	14	75	69	0	17	13	1.19
934053--934155	26	3.6	30	69	20	78	73	0	15	10	1.09
934082--934154	7	9.7	7	74	22	60	73	0	15	10	1.08
934042--934155	36	3.0	38	76	17	96	72	0	15	11	1.11
935429--935538	37	3.0	37	91	2	168	38	19	20	22	1.94
935564--935971	55	7.6	55	80	10	336	28	16	24	30	1.96
935564--935972	165	2.5	159	80	10	429	28	16	24	30	1.96
938583--938619	12	3.0	12	92	7	65	67	0	0	32	0.91
938583--938616	13	2.7	13	95	4	61	70	0	0	29	0.87
939537--939596	24	2.4	25	81	15	72	50	15	15	20	1.79
939621--939747	24	5.3	24	72	7	78	33	19	22	25	1.97
951892--951992	45	2.3	44	91	1	157	25	17	21	34	1.96
952313--952372	21	2.9	21	84	0	75	6	36	13	43	1.70
962262--962472	52	4.1	52	98	0	404	42	16	7	33	1.76
963544--963671	41	3.1	41	78	15	120	28	23	14	33	1.93
963570--963671	41	2.5	42	80	15	122	30	22	12	34	1.92
971846--972175	111	3.0	111	94	1	576	45	10	7	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972460--972595	50	2.7	50	81	1	157	19	25	33	20	1.97
974478--974550	10	7.0	10	74	9	65	57	19	10	12	1.64
974500--974549	20	2.5	20	86	0	73	56	20	12	12	1.67
974500--974601	20	5.2	20	67	19	63	60	17	9	11	1.57
974798--974835	14	2.7	14	91	0	58	55	21	13	10	1.67
976319--976355	18	2.1	18	94	0	65	27	32	5	35	1.79
977056--977086	16	1.9	16	93	0	53	29	0	3	67	1.06
984205--984252	22	2.2	22	81	3	62	58	4	8	29	1.46
984785--984821	18	2.1	18	100	0	74	37	0	21	40	1.54
986407--986446	21	1.9	21	84	0	53	25	2	27	45	1.66
987817--987856	16	2.7	15	81	11	55	50	0	0	50	1.00
987817--987858	15	2.8	16	85	7	61	50	0	0	50	1.00
988192--988225	17	1.9	18	88	5	52	44	0	2	52	1.16
988919--988947	2	14.5	2	100	0	58	51	0	0	48	1.00
992442--992466	3	8.3	3	100	0	50	64	0	0	36	0.94
993170--993205	16	2.4	15	90	9	56	27	2	5	63	1.30
993432--993473	22	1.9	22	85	9	59	59	0	2	38	1.10
993580--993609	7	4.3	7	100	0	60	70	0	0	30	0.88
995188--995239	27	1.9	27	84	0	68	28	23	7	40	1.82
996163--996294	68	1.9	69	83	4	169	31	11	18	39	1.86
996708--996745	20	1.9	20	88	0	58	28	21	7	42	1.81
996613--996750	62	2.3	60	74	13	131	35	19	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997522--997592	3	23.7	3	100	0	142	67	0	0	32	0.91
1001381--1001419	17	2.3	17	86	0	51	56	2	0	41	1.13
1004799--1004846	19	2.4	20	89	6	71	8	14	0	77	0.99
1038626--1038698	35	2.1	35	87	5	103	30	0	26	43	1.55
1038647--1038741	21	4.6	21	72	15	81	26	0	29	44	1.55
1040240--1040277	19	2.0	19	85	10	51	50	2	2	44	1.30
1041285--1041351	31	2.2	29	78	5	71	52	5	1	40	1.35
1041603--1041733	59	2.2	59	82	8	158	32	15	5	47	1.68
1043428--1043456	4	7.2	4	100	0	58	0	24	0	75	0.80
1049016--1049057	21	2.0	21	100	0	84	33	14	14	38	1.86

Tables:   1   2   3   4   5   6   7   8