genome.fa.s7775.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007775.1 Hibiscus syriacus cultivar Beakdansim tig00110056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  599510

Tables:   1   2   3   4   

This is table  3  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384331--384369	21	1.9	21	89	5	62	43	2	5	48	1.38
391722--391761	21	1.9	21	89	0	62	10	25	40	25	1.86
391742--391804	20	2.9	21	79	9	65	15	25	34	23	1.95
399616--399687	24	3.0	24	87	0	108	50	18	13	18	1.79
399618--399687	12	5.8	12	73	6	61	50	18	14	17	1.79
399616--399724	48	2.3	47	84	6	130	47	16	16	19	1.83
399616--399724	24	4.5	25	77	11	102	47	16	16	19	1.83
407396--407631	45	5.2	45	91	0	373	22	22	11	44	1.84
408720--408759	19	2.1	19	85	0	53	55	5	5	35	1.44
409562--409752	89	2.1	90	87	1	267	28	26	24	21	1.99
414447--414617	89	1.9	90	90	1	272	29	26	24	19	1.99
417166--417198	17	1.9	17	93	0	57	36	6	12	45	1.66
417433--417475	13	3.3	13	83	0	50	6	27	37	27	1.83
417451--417483	13	2.5	13	95	0	57	3	30	42	24	1.70
422477--422539	21	3.0	21	86	4	90	25	22	26	25	2.00
429275--429331	22	2.7	21	81	5	69	26	24	24	24	2.00
436969--437013	15	3.0	16	84	9	60	80	0	20	0	0.72
437849--438011	65	2.6	63	85	4	206	39	20	13	26	1.89
438747--438776	16	1.9	16	93	6	53	43	6	0	50	1.28
439897--439948	18	2.8	19	77	13	56	28	0	0	71	0.87
440106--440181	29	2.6	29	80	15	77	13	1	9	76	1.08
440146--440201	16	3.5	15	75	18	51	17	3	1	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440212--440284	38	1.9	38	83	5	94	16	5	4	73	1.17
440294--440328	13	2.7	13	86	0	52	14	11	0	74	1.08
444832--444873	20	2.0	22	86	9	61	35	11	2	50	1.52
447218--447304	35	2.5	34	78	12	88	55	10	6	27	1.59
449533--449579	16	2.9	16	90	3	67	63	2	4	29	1.25
449536--449596	9	7.1	9	76	10	65	62	1	3	32	1.21
449533--449596	17	3.8	17	81	4	76	64	1	3	31	1.19
449536--449597	26	2.4	25	83	2	79	61	3	3	32	1.28
451785--451831	7	6.7	7	97	0	85	53	29	2	14	1.53
457278--457318	18	2.2	18	86	4	55	53	0	0	46	1.00
458591--458621	16	1.9	16	100	0	62	38	6	25	29	1.81
461746--461794	16	3.1	16	90	0	71	40	6	26	26	1.79
463754--464059	9	33.0	9	68	21	64	71	0	8	18	1.17
463769--464048	4	66.8	4	66	24	75	72	1	8	18	1.16
463761--464072	40	7.6	39	72	17	147	73	0	8	17	1.14
463761--463909	14	11.2	13	73	16	110	73	1	8	16	1.14
463769--464063	29	10.8	26	72	15	138	72	1	8	17	1.15
463812--463888	39	2.0	38	87	12	113	74	0	9	16	1.07
463827--463919	39	2.4	38	82	12	102	74	1	8	16	1.12
463834--464026	15	12.3	15	66	24	71	71	1	6	20	1.15
464010--464044	19	1.9	17	88	11	52	74	0	8	17	1.06
463782--464067	52	5.8	52	69	20	150	72	1	8	18	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463812--464067	20	13.1	19	69	23	117	72	0	8	18	1.14
466966--467232	85	3.1	85	81	2	329	25	16	20	36	1.94
467413--467594	65	2.8	65	88	0	274	26	13	18	41	1.87
469007--469202	99	2.0	99	83	4	252	31	17	17	33	1.93
473173--473226	14	3.9	14	81	11	67	74	1	11	12	1.16
473240--473399	4	38.8	4	67	27	63	71	1	6	21	1.15
473238--473399	44	3.5	44	73	20	125	71	1	6	20	1.14
473172--473467	9	31.2	9	69	18	115	72	1	8	17	1.16
473284--473444	24	6.9	23	68	19	68	72	1	6	20	1.14
473242--473398	20	7.9	19	70	17	81	70	1	6	21	1.16
473328--473446	40	2.9	40	78	12	127	72	0	6	20	1.12
473393--473467	23	3.3	23	78	14	66	74	1	9	14	1.12
473409--473475	28	2.4	27	76	16	66	74	0	8	16	1.05
473528--473607	41	1.9	42	85	12	112	57	0	3	38	1.17
478491--478523	13	2.5	13	90	0	57	42	21	18	18	1.89
480346--480395	23	2.2	23	88	0	73	38	6	22	34	1.78
480312--480471	87	1.8	87	97	0	302	41	11	15	31	1.82
480424--480471	23	2.1	23	92	0	78	37	10	16	35	1.83
480466--480985	200	2.6	196	84	4	677	32	15	14	38	1.87
483646--483694	19	2.6	19	83	0	71	55	8	2	34	1.41
487943--487984	20	2.0	21	86	4	59	40	11	11	35	1.79
487777--488630	182	4.7	182	88	1	1189	27	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489061--489116	21	2.7	21	97	0	103	39	17	26	16	1.91
489105--489219	20	5.7	19	76	11	77	34	23	17	24	1.96
489102--489179	41	1.9	41	86	0	111	38	23	16	21	1.93
489387--489430	22	2.0	22	90	0	70	22	43	15	18	1.88
489694--489731	20	1.9	20	88	0	58	13	15	21	50	1.78
490750--490845	48	2.0	48	100	0	192	37	18	18	25	1.94
491099--491143	18	2.5	18	88	0	72	26	44	15	13	1.83
491619--491684	20	3.4	19	72	6	60	42	24	19	13	1.87
491674--491763	14	5.9	14	73	19	81	47	22	17	12	1.80
491660--491773	32	3.5	32	93	1	192	48	21	18	12	1.80
491797--491854	14	3.9	14	77	16	62	10	17	24	48	1.78
491792--491870	32	2.4	33	93	2	133	11	18	22	46	1.81
491843--491900	20	3.0	19	82	5	71	17	24	20	37	1.93
491854--491909	20	2.9	19	84	5	76	16	23	23	37	1.93
493776--493811	14	2.6	14	90	0	54	30	0	22	47	1.52
493918--493971	14	3.5	14	77	22	63	48	20	20	11	1.80
493899--493976	33	2.4	33	91	0	120	42	21	23	12	1.87
493995--494052	20	2.9	20	94	0	98	17	22	22	37	1.93
495478--495604	33	3.8	33	86	4	193	43	19	22	14	1.88
495479--495611	66	2.0	66	95	0	239	42	19	21	16	1.89
495604--495646	20	2.2	20	83	4	52	18	18	20	41	1.90
495787--495823	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497178--497244	21	3.2	21	68	4	55	19	20	35	23	1.95
497178--497302	42	3.0	41	81	6	117	22	17	37	22	1.94
499297--499457	20	8.8	19	69	16	81	45	21	21	11	1.83
499322--499420	33	3.0	33	87	1	135	40	26	22	11	1.87
499392--499462	19	3.7	19	86	3	97	49	21	18	11	1.78
499458--499521	19	3.4	19	95	0	101	9	15	25	50	1.74
499458--499557	38	2.8	36	79	13	107	11	17	24	48	1.79
500220--500260	21	2.0	21	85	0	55	34	31	17	17	1.93
500947--500981	18	1.9	18	88	11	54	42	0	5	51	1.25
503799--503961	65	2.5	64	83	3	211	26	15	26	30	1.96
503909--503959	19	2.7	19	82	8	61	25	13	35	25	1.93
511278--511440	65	2.5	64	83	3	211	26	15	26	30	1.96
511388--511438	19	2.7	19	82	8	61	25	13	35	25	1.93
513202--513296	46	2.1	46	84	4	120	47	4	34	13	1.63
513253--513353	37	2.7	37	75	0	94	46	5	31	15	1.70
514156--514186	14	2.2	14	94	0	53	29	16	6	48	1.70
514812--514851	22	1.9	21	85	10	55	72	0	2	25	0.97
517735--517765	15	2.0	16	93	6	55	35	6	6	51	1.53
520882--520942	13	4.7	13	85	0	77	31	19	14	34	1.92
520882--520942	26	2.3	26	91	0	95	31	19	14	34	1.92
520921--521086	85	2.0	85	91	2	271	30	21	17	30	1.96
521106--521149	2	22.5	2	95	4	81	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524890--524934	18	2.5	18	88	0	72	68	2	26	2	1.12
526648--526743	44	2.2	44	92	3	158	21	23	15	38	1.92
526609--526807	110	1.8	109	89	5	312	23	22	14	39	1.90
526866--526978	36	3.3	35	71	25	116	24	21	13	40	1.89
526695--526979	66	4.4	64	84	5	383	25	20	12	41	1.88
526695--526978	131	2.2	131	86	6	396	25	19	13	41	1.88
527136--527241	43	2.6	41	80	10	101	23	33	18	24	1.97
526981--527342	131	2.7	131	81	2	393	24	28	18	27	1.98
527522--527547	2	13.0	2	100	0	52	50	0	0	50	1.00
531430--531476	23	2.2	23	88	11	73	40	0	10	48	1.38

Tables:   1   2   3   4