genome.fa.s7775.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007775.1 Hibiscus syriacus cultivar Beakdansim tig00110056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  599510

Tables:   1   2   3   4   

This is table  4  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532207--532278	24	3.0	24	95	0	126	26	22	12	38	1.89
539947--540295	142	2.4	145	82	1	389	28	16	18	36	1.92
541455--541653	99	2.0	99	100	0	398	25	11	27	36	1.89
549382--549425	19	2.2	21	88	11	67	50	2	2	45	1.27
549850--549882	17	1.9	17	93	0	57	60	0	0	39	0.97
557836--557906	29	2.4	29	97	0	133	26	26	25	21	1.99
558129--558157	14	2.1	14	93	6	51	68	3	6	20	1.27
568630--568667	18	2.1	18	90	0	58	78	5	7	7	1.07
570831--570887	21	2.7	21	76	10	62	19	8	3	68	1.31
574733--574859	44	3.2	44	67	28	127	25	0	12	60	1.37
574730--574945	76	2.9	74	92	2	324	27	0	13	58	1.39
581253--581299	5	9.6	5	76	4	51	23	4	0	72	1.02
583371--583497	44	3.2	43	67	28	125	25	1	12	59	1.42
583370--583575	76	2.7	75	90	3	317	28	0	12	58	1.40
583383--583500	25	4.7	24	68	20	80	27	0	13	58	1.41
589326--589381	24	2.3	23	79	11	58	53	10	0	35	1.36
589819--590014	107	1.8	107	86	4	288	49	14	9	26	1.73
590506--590598	21	4.5	21	78	4	100	39	18	24	17	1.91
590506--590598	41	2.3	41	100	0	186	39	18	24	17	1.91
590631--590681	20	2.5	20	93	0	84	25	27	21	25	1.99
591200--591280	19	4.5	19	73	16	73	46	24	17	11	1.80
591276--591460	19	10.1	19	77	14	174	11	22	22	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591276--591460	33	5.1	38	79	12	174	11	22	22	43	1.85
591403--591460	20	2.9	20	80	10	64	13	24	18	43	1.87
593510--593576	21	3.2	21	66	6	55	23	35	20	19	1.95
593455--593576	42	2.9	42	80	4	113	23	36	17	22	1.95
594931--594966	14	2.6	14	95	0	63	30	0	25	44	1.54
595105--595144	20	2.0	20	95	0	71	52	20	15	12	1.74
595145--595294	19	8.7	19	65	20	71	15	22	20	41	1.90
595149--595274	33	3.9	32	85	10	184	15	23	19	42	1.89
595142--595273	65	2.0	66	95	1	239	16	22	19	40	1.91
597543--597567	12	2.1	12	100	0	50	0	28	0	72	0.86
597739--597792	24	2.2	24	93	0	90	38	20	14	25	1.91
597755--597806	24	2.2	24	82	0	59	36	21	15	26	1.93
598822--598859	20	1.9	20	94	0	67	39	23	21	15	1.92
598865--598935	33	2.2	33	81	0	79	21	19	19	39	1.93
598878--598936	14	3.8	16	76	24	63	13	22	18	45	1.84
598878--598955	33	2.4	33	88	0	111	14	23	20	42	1.88

Tables:   1   2   3   4

The End!