genome.fa.s7844.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007844.1 Hibiscus syriacus cultivar Beakdansim tig00110198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2094103

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 732 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250594--250652	23	2.6	23	80	0	73	52	18	15	13	1.74
262643--262672	2	15.0	2	100	0	60	50	0	0	50	1.00
265289--265331	2	21.5	2	100	0	86	48	0	0	51	1.00
270737--270764	13	2.2	13	100	0	56	64	0	0	35	0.94
274570--274900	165	2.0	165	100	0	662	42	13	11	31	1.80
277791--278088	111	2.7	109	88	7	401	24	20	15	39	1.91
278015--278175	87	1.9	85	87	5	234	25	19	15	39	1.91
278100--278444	135	2.6	136	91	2	547	25	22	17	35	1.95
279321--279404	6	12.7	7	72	21	58	9	11	1	77	1.05
279313--279408	14	7.3	14	69	25	59	8	12	1	78	1.02
279315--279371	19	2.9	19	84	5	69	8	14	0	77	0.99
279313--279409	33	3.0	33	85	10	137	8	13	1	77	1.04
294145--294178	2	17.0	2	100	0	68	50	0	0	50	1.00
294461--294504	22	2.0	23	86	8	65	40	34	0	25	1.56
294863--294890	7	4.0	7	100	0	56	57	0	42	0	0.99
306848--306887	4	10.0	4	94	0	71	27	0	22	50	1.50
314110--314293	95	1.9	96	81	3	219	44	13	15	27	1.83
323053--323082	2	15.0	2	100	0	60	50	0	0	50	1.00
332559--332584	13	2.0	13	100	0	52	69	7	0	23	1.14
332706--332840	60	2.3	58	85	5	180	33	19	5	42	1.73
333014--333081	31	2.2	31	87	10	95	38	4	26	30	1.76
339268--339332	32	2.0	32	96	0	121	32	12	13	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339403--339432	9	3.3	9	90	0	51	40	23	10	26	1.86
339775--339848	31	2.6	28	73	19	71	40	5	9	44	1.60
339971--340020	25	2.0	26	88	11	77	60	8	4	28	1.43
341404--341488	32	2.7	31	80	8	91	43	3	9	43	1.54
347584--347633	15	3.2	16	72	8	50	62	2	6	30	1.31
352359--352400	22	2.0	21	86	13	59	30	4	2	61	1.29
352402--352477	37	2.1	37	85	5	100	50	1	3	44	1.29
352453--352500	18	2.7	18	80	9	62	54	4	0	41	1.20
356409--356474	33	1.9	35	82	11	84	51	3	1	43	1.26
357021--357062	18	2.4	17	84	11	50	11	26	4	57	1.54
360466--360564	33	3.0	33	92	1	155	46	14	7	32	1.71
360559--360600	21	2.0	21	95	0	75	47	7	14	30	1.71
368518--368592	34	2.3	33	86	9	100	42	2	2	52	1.29
369228--369286	27	2.1	28	87	3	84	52	15	0	32	1.43
382426--382454	8	3.8	8	95	4	51	0	44	0	55	0.99
384083--384218	59	2.3	60	76	14	138	38	15	12	33	1.85
388313--388385	22	3.1	22	75	17	74	32	20	12	34	1.90
397418--397605	63	3.0	60	80	9	187	23	21	25	28	1.99
398058--398114	18	3.3	18	63	22	50	31	54	8	5	1.53
398034--398164	33	4.0	33	89	0	199	29	51	6	12	1.63
405758--405803	23	2.0	22	84	12	58	52	0	10	36	1.37
405886--405956	24	2.9	24	75	6	63	50	1	1	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406218--406255	15	2.3	17	86	13	53	0	21	0	78	0.74
424820--424891	22	3.4	21	67	18	60	18	5	25	51	1.67
424811--424905	41	2.3	41	92	0	163	23	7	23	46	1.77
426533--426615	36	2.3	36	95	0	148	40	3	18	37	1.68
426548--426608	17	3.5	17	68	16	52	39	4	19	36	1.74
426733--426816	36	2.3	36	85	0	105	46	11	8	33	1.71
436051--436109	25	2.4	25	91	5	93	67	3	1	27	1.16
436110--437641	4	391.0	4	94	4	2720	49	0	25	24	1.52
437674--437771	51	2.0	49	90	8	153	30	17	24	27	1.97
437688--437795	49	2.2	51	83	6	132	33	17	22	26	1.96
440029--440066	17	2.2	17	86	9	51	23	2	10	63	1.39
445752--445788	6	6.2	6	96	0	56	40	0	59	0	0.97
446096--446143	2	24.0	2	100	0	96	50	0	0	50	1.00
457281--457376	29	3.3	29	100	0	192	44	13	10	31	1.77
457461--457824	179	2.0	179	90	2	570	34	13	12	39	1.83
462770--462824	24	2.3	24	90	0	83	14	9	20	56	1.65
464335--464409	10	7.7	10	68	21	52	9	10	21	58	1.59
464341--464405	16	4.1	16	91	0	112	7	10	23	58	1.57
467072--467126	26	2.1	26	100	0	110	23	14	34	27	1.94
469148--469175	14	2.0	14	100	0	56	28	0	28	42	1.56
470484--470516	2	16.5	2	100	0	66	51	0	0	48	1.00
470825--470885	31	2.0	31	86	0	86	39	6	16	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472036--472103	29	2.3	29	82	0	82	35	14	11	38	1.83
477912--477989	38	2.1	38	83	9	97	15	11	30	42	1.82
489298--489365	25	2.9	23	91	8	118	29	35	8	26	1.87
504774--504812	20	2.0	20	90	10	62	38	10	0	51	1.36
508881--509222	171	2.0	171	100	0	684	33	23	23	18	1.97
513147--513202	29	2.0	28	82	6	69	42	1	3	51	1.29
521973--522037	31	2.1	31	91	0	103	43	7	6	43	1.58
526836--526882	23	2.0	23	100	0	94	25	21	12	40	1.89
534645--534671	2	13.5	2	100	0	54	51	0	0	48	1.00
542857--542890	18	1.9	18	88	5	52	50	5	14	29	1.67
545687--545742	28	2.1	28	90	6	89	28	16	5	50	1.67
552958--553001	16	2.7	16	89	3	61	38	0	4	56	1.20
553826--554681	6	145.0	6	96	3	1596	33	0	16	49	1.47
557031--557065	18	1.9	18	88	11	54	68	2	0	28	1.04
557346--557409	21	3.0	21	75	22	62	34	4	0	60	1.17
558766--559090	120	2.8	116	83	8	410	45	8	13	32	1.73
562750--563139	114	3.4	113	76	3	372	31	22	12	33	1.92
562698--563140	114	3.9	112	74	7	349	31	22	13	32	1.92
563930--563959	3	9.7	3	92	7	51	66	0	0	33	0.92
567398--567500	36	2.9	36	98	0	197	23	17	17	41	1.90
568950--568983	14	2.4	14	90	0	50	79	0	11	8	0.94
585379--585428	12	4.2	12	82	5	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585791--585844	22	2.5	20	80	16	63	46	0	1	51	1.11
588799--588859	19	3.1	19	71	21	54	34	3	0	62	1.12
589191--589232	2	21.0	2	100	0	84	50	0	0	50	1.00
591328--591359	15	2.1	15	100	0	64	37	37	6	18	1.76
594881--594918	19	2.0	19	85	10	51	50	0	7	42	1.31
595439--595475	13	2.5	15	87	12	51	27	8	0	64	1.21
595652--595677	2	13.0	2	100	0	52	50	0	0	50	1.00
597329--597373	21	2.1	21	100	0	90	40	13	0	46	1.43
597393--597438	19	2.5	18	85	3	56	45	6	4	43	1.49
601444--601498	28	2.0	28	85	0	74	32	23	16	27	1.96
602717--602771	28	2.0	28	85	7	76	41	23	14	20	1.89
608913--608961	23	2.1	23	100	0	98	46	16	10	26	1.78
614016--614091	35	2.2	35	90	4	118	39	22	1	36	1.63
614488--614735	130	1.9	130	90	0	397	36	14	12	35	1.85
614502--614766	130	2.0	129	80	4	291	39	13	13	33	1.84
615063--615125	28	2.3	27	78	8	63	46	1	3	49	1.27
615205--615238	16	2.0	18	88	11	54	64	5	2	26	1.30
615742--615803	32	1.9	32	86	0	88	40	6	17	35	1.76
623421--623458	6	6.3	6	96	0	67	13	71	0	15	1.16
627560--627586	8	3.4	8	100	0	54	51	11	0	37	1.37
627793--627832	20	2.1	19	85	4	53	72	5	0	22	1.04
634086--634131	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643283--643342	23	2.8	22	80	7	70	20	35	25	20	1.96
647342--647456	32	3.6	32	82	1	124	41	7	7	42	1.63
647979--648054	31	2.4	30	72	8	71	57	7	5	28	1.49
649559--649624	27	2.4	27	84	2	96	43	31	9	15	1.77
649608--649685	33	2.4	32	82	4	95	37	25	11	25	1.90
649606--649678	32	2.3	33	79	11	89	36	23	10	28	1.89
656323--656913	297	2.0	297	98	0	1146	31	17	21	29	1.96
663184--663209	4	6.5	4	100	0	52	50	0	0	50	1.00
664610--664654	13	3.5	13	76	11	56	48	8	0	42	1.34
666695--666725	4	7.8	4	100	0	62	51	22	0	25	1.48

Tables:   1   2   3   4   5   6   7