genome.fa.s7844.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007844.1 Hibiscus syriacus cultivar Beakdansim tig00110198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2094103

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 732 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672742--672874	60	2.2	60	78	7	146	34	9	12	42	1.76
676123--676276	84	1.8	84	86	5	222	20	5	19	53	1.65
679818--679850	14	2.3	15	89	5	50	66	0	6	27	1.15
679824--679872	19	2.6	19	81	15	66	65	0	6	28	1.16
684795--684820	2	13.0	2	100	0	52	50	0	0	50	1.00
687407--687456	13	3.6	13	86	8	64	32	6	0	62	1.20
688163--688275	29	3.9	29	92	2	183	20	38	24	15	1.92
688272--688351	40	2.0	40	100	0	160	10	17	37	35	1.83
688328--688384	13	4.1	13	81	16	69	1	21	47	29	1.61
688650--688674	12	2.1	12	100	0	50	16	0	60	24	1.36
688711--688778	35	1.9	35	93	0	118	27	30	16	25	1.96
689215--689258	21	2.1	21	86	0	61	29	0	18	52	1.46
689277--689308	8	4.0	8	100	0	64	37	0	12	50	1.41
689764--689812	18	2.5	20	83	9	66	38	0	12	48	1.41
689762--689825	18	3.4	18	75	8	65	35	0	10	53	1.36
689788--689831	23	1.9	23	85	0	61	40	0	9	50	1.34
690036--690100	26	2.6	25	79	13	62	50	6	1	41	1.36
691564--691915	26	14.2	26	75	12	265	43	2	9	45	1.49
691506--691899	124	3.2	124	95	1	695	43	2	9	45	1.48
691874--691915	14	3.1	14	86	3	59	45	2	4	47	1.36
691868--691941	38	1.9	38	83	5	96	45	4	5	44	1.45
692017--692099	14	6.2	14	72	20	63	38	7	9	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692028--692061	11	3.2	11	83	8	52	38	8	5	47	1.59
692028--692071	21	2.1	21	86	0	61	40	9	4	45	1.56
692066--692098	17	1.9	17	93	0	57	36	6	12	45	1.66
694243--694273	15	2.1	14	94	5	53	54	6	0	38	1.26
694248--694294	16	3.0	16	84	9	53	59	10	0	29	1.31
694335--694414	33	2.5	33	84	9	96	50	12	0	37	1.41
694453--694544	45	2.0	49	85	12	131	47	10	0	41	1.38
694453--694557	47	2.2	48	83	13	128	48	11	0	40	1.39
694525--694613	41	2.2	40	78	8	90	46	10	1	42	1.45
694649--694687	16	2.3	18	86	8	55	56	5	0	38	1.22
694902--695010	50	2.2	50	91	6	179	22	18	39	20	1.92
695045--695101	29	2.0	29	100	0	114	24	31	31	12	1.92
695051--695109	17	3.8	17	70	21	65	23	32	30	13	1.93
695080--695115	17	2.1	17	89	0	54	25	33	27	13	1.94
695114--695185	32	2.2	32	87	0	108	8	31	29	30	1.87
695170--695282	33	3.2	33	86	13	172	14	15	34	36	1.87
706605--706651	19	2.4	19	85	3	58	31	23	23	21	1.98
708357--708749	196	2.0	197	99	0	779	25	20	23	29	1.99
710955--711017	31	2.0	31	93	6	110	49	0	9	41	1.35
729375--729415	3	13.7	3	100	0	82	65	0	0	34	0.93
730154--730209	25	2.3	25	84	9	71	39	0	0	60	0.97
731216--731272	28	2.0	28	93	6	98	29	17	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740311--740534	21	11.0	20	84	8	215	24	20	16	39	1.92
740312--740488	62	2.9	62	84	1	214	23	20	16	39	1.92
740311--740534	41	5.5	41	79	10	210	24	20	16	39	1.92
740311--740538	20	11.1	20	80	9	144	24	20	16	39	1.92
740312--740538	62	3.7	60	82	8	201	24	20	16	38	1.92
744835--744866	9	3.6	9	95	0	55	25	0	0	75	0.81
754665--754695	16	1.9	16	100	0	62	45	25	22	6	1.76
761556--761656	50	2.0	50	100	0	202	33	24	21	19	1.97
767057--767081	12	2.1	12	100	0	50	24	0	0	76	0.80
772735--772779	21	2.1	21	87	0	63	31	28	24	15	1.96
773359--773393	18	1.9	18	88	11	54	54	5	17	22	1.64
773630--773667	2	19.0	2	100	0	76	50	0	0	50	1.00
774445--774507	13	5.5	13	65	27	52	19	26	26	26	1.99
774441--774521	22	3.6	22	96	1	144	18	27	29	24	1.98
776724--776770	17	2.9	16	75	9	51	38	0	23	38	1.55
777652--777696	21	2.1	21	87	0	63	31	28	24	15	1.96
778281--778315	18	1.9	18	88	11	54	54	5	17	22	1.64
779336--779398	13	5.5	13	65	27	52	19	26	26	26	1.99
779332--779411	22	3.6	22	98	0	151	18	27	28	25	1.98
781609--781655	17	2.9	16	75	9	51	38	0	23	38	1.55
782537--782581	21	2.1	21	87	0	63	31	28	24	15	1.96
783164--783198	18	1.9	18	88	11	54	54	5	17	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784231--784319	22	4.0	22	91	2	133	20	23	28	28	1.99
785762--785859	24	4.1	24	85	5	117	25	15	21	37	1.92
796868--796902	17	2.0	18	88	5	54	25	17	14	42	1.86
797090--797121	16	1.9	17	93	6	57	34	6	0	59	1.23
797560--797601	22	2.0	21	90	9	68	61	0	0	38	0.96
805730--805779	2	25.0	2	95	0	91	48	0	2	50	1.12
823207--823238	16	2.0	16	100	0	64	31	31	6	31	1.82
833037--833065	2	14.5	2	100	0	58	51	0	0	48	1.00
840372--840763	186	2.1	186	93	1	671	42	3	8	45	1.50
843157--843213	26	2.2	26	96	0	105	31	10	10	47	1.72
859885--859910	13	2.0	13	100	0	52	69	0	15	15	1.20
859939--859993	24	2.2	24	87	3	83	36	1	3	58	1.26
866759--866832	21	3.5	21	96	0	130	29	24	18	27	1.98
870595--870971	188	2.0	188	100	0	754	37	24	15	22	1.93
878841--878871	13	2.4	13	94	0	53	48	19	6	25	1.72
889119--889194	27	2.8	27	83	0	98	28	14	22	34	1.93
901069--901121	23	2.4	23	84	6	74	39	5	13	41	1.68
901069--901116	21	2.2	21	88	7	69	41	6	12	39	1.68
901658--901770	35	3.2	34	86	5	154	42	22	0	34	1.60
902763--902871	33	3.2	33	84	6	121	35	0	22	41	1.60
905242--905399	52	2.9	54	84	4	196	44	3	7	44	1.48
915213--915288	31	2.6	29	82	10	91	25	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926106--926144	16	2.4	16	86	4	51	51	2	0	46	1.14
926519--926587	35	2.0	32	83	10	84	37	2	5	53	1.40
928617--928665	21	2.4	21	86	3	64	26	4	2	67	1.19
928617--928664	10	4.7	10	84	5	60	25	4	2	68	1.18
929719--929784	19	3.5	19	70	12	55	45	1	1	51	1.19
929719--929762	16	2.9	16	80	6	56	47	0	0	52	1.00
933466--933536	35	2.0	35	100	0	142	25	14	28	32	1.94
954695--954735	21	2.0	21	90	0	64	43	0	14	41	1.45
956634--956660	11	2.5	11	100	0	54	18	25	0	55	1.43
958433--958462	2	15.5	2	93	6	53	50	0	0	50	1.00
958503--958552	24	2.1	25	81	7	59	44	6	2	48	1.39
958602--958666	23	2.8	23	77	11	62	24	12	16	46	1.82
958792--959249	222	2.0	228	96	3	847	51	10	5	33	1.58
960388--960429	4	10.5	4	89	0	57	26	7	23	42	1.80
960387--960429	16	2.7	16	96	0	77	25	9	23	41	1.84
976525--976550	7	3.7	7	100	0	52	11	88	0	0	0.52
994704--994752	3	16.7	3	95	4	91	34	0	0	65	0.93
997503--997544	14	2.8	15	82	17	52	42	16	0	40	1.48
1004792--1004858	35	1.9	34	84	3	89	23	31	28	16	1.96
1005223--1005271	18	2.8	18	84	3	64	51	8	4	36	1.51
1005505--1005725	112	2.0	113	97	0	417	23	8	19	48	1.75
1006540--1006587	20	2.3	21	92	3	80	50	4	8	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007148--1007194	19	2.5	19	76	10	53	46	8	0	44	1.33
1008130--1008209	28	2.9	28	84	0	106	30	28	21	20	1.98
1012208--1012240	17	2.0	17	94	5	59	9	12	18	60	1.57
1025228--1025254	4	6.8	4	100	0	54	51	0	0	48	1.00
1027287--1027803	257	2.0	259	99	0	1020	34	17	20	27	1.95
1032804--1032867	21	3.4	20	66	29	59	32	4	18	43	1.71
1032802--1032917	35	3.2	36	83	10	157	34	4	18	43	1.69
1033324--1033356	16	2.1	16	94	0	57	33	6	27	33	1.81
1037421--1037540	35	3.3	36	87	8	156	30	5	20	44	1.72
1042425--1042466	22	1.9	22	85	0	57	40	14	0	45	1.45

Tables:   1   2   3   4   5   6   7